Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 3.9e-120 434.9 229 100.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 7.3e-119 430.6 229 98.7
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 1.6e-113 412.9 229 96.1
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 4.6e-113 411.4 230 96.1
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 2.6e-108 395.6 229 90.8
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 3.4e-108 395.2 229 89.1
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 6.4e-107 391.0 233 90.1
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 1.9e-106 389.4 235 88.1
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 5.5e-106 387.9 228 89.9
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 7.1e-106 387.5 228 89.5
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 7.1e-106 387.5 233 88.4
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 9.3e-106 387.1 230 89.6
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 9.3e-106 387.1 226 88.5
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 4.6e-105 384.8 230 87.4
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.6e-105 384.8 226 88.9
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 6.0e-105 384.4 230 88.7
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.9e-105 384.0 226 88.5
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 7.9e-105 384.0 224 91.1
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.0e-104 383.6 226 90.3
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.0e-104 383.6 233 88.8
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.3e-104 383.3 230 88.7
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 2.3e-104 382.5 230 87.0
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 2.3e-104 382.5 230 88.7
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.0e-104 382.1 222 89.2
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 5.1e-104 381.3 229 88.6
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 5.1e-104 381.3 226 88.1
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 8.7e-104 380.6 226 87.6
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 88.3
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.1e-103 380.2 229 88.2
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.9e-103 379.4 229 88.2
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.5e-103 379.0 225 88.9
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 3.3e-103 378.6 230 87.8
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 3.3e-103 378.6 224 86.6
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 3.3e-103 378.6 229 87.8
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.6e-103 377.9 229 87.8
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.6e-103 377.9 229 87.8
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 7.4e-103 377.5 225 89.3
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 7.4e-103 377.5 226 88.9
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 9.6e-103 377.1 232 85.8
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.3e-102 376.7 224 89.3
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 1.3e-102 376.7 229 87.3
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 1.6e-102 376.3 224 89.3
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 2.1e-102 375.9 230 86.5
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 2.1e-102 375.9 230 87.4
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 2.1e-102 375.9 224 88.8
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 2.1e-102 375.9 235 84.7
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 2.8e-102 375.6 222 85.6
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 2.8e-102 375.6 224 87.9
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.8e-102 375.6 224 87.9
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 4.8e-102 374.8 229 85.2
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 8.2e-102 374.0 229 86.5
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 8.2e-102 374.0 231 86.6
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 8.2e-102 374.0 229 84.7
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 8.2e-102 374.0 229 86.9
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.1e-101 373.6 229 86.0
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.1e-101 373.6 230 85.7
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.8e-101 372.9 230 86.5
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.8e-101 372.9 234 84.6
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.4e-101 372.5 224 87.5
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 3.1e-101 372.1 229 86.5
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 3.1e-101 372.1 229 86.5
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 3.1e-101 372.1 229 87.3
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 3.1e-101 372.1 225 86.7
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.0e-101 371.7 209 92.8
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 4.0e-101 371.7 229 86.5
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 5.3e-101 371.3 229 86.5
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 5.3e-101 371.3 229 86.9
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 5.3e-101 371.3 229 86.9
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 5.3e-101 371.3 231 85.3
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 9.0e-101 370.5 223 88.8
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.2e-100 370.2 230 86.1
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.2e-100 370.2 225 86.7
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.5e-100 369.8 210 91.9
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 2.0e-100 369.4 229 86.0
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 2.0e-100 369.4 232 84.5
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 2.0e-100 369.4 223 87.0
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 3.4e-100 368.6 225 86.2
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 4.5e-100 368.2 210 91.4
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 4.5e-100 368.2 210 91.4
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 4.5e-100 368.2 210 91.4
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 5.8e-100 367.9 210 91.0
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 7.6e-100 367.5 210 91.4
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 7.6e-100 367.5 233 85.8
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 7.6e-100 367.5 229 83.8
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.0e-99 367.1 229 85.6
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.0e-99 367.1 229 85.2
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.0e-99 367.1 231 85.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.3e-99 366.7 253 78.7
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.3e-99 366.7 229 85.2
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.3e-99 366.7 208 92.8
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.7e-99 366.3 225 86.7
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.7e-99 366.3 210 90.5
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.2e-99 365.9 229 84.7
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.2e-99 365.9 220 87.3
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 2.9e-99 365.5 229 85.2
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.1e-98 363.6 229 84.7
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.4e-98 363.2 230 84.3
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.9e-98 362.8 225 85.8
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 1.9e-98 362.8 205 90.2
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 3.2e-98 362.1 229 84.3
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 3.2e-98 362.1 228 82.9
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.2e-97 360.1 224 85.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.2e-97 360.1 226 85.0
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.2e-97 360.1 229 80.8
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.6e-97 359.8 232 82.8
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.6e-97 359.8 212 86.8
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.6e-97 359.8 228 85.1
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.7e-97 359.0 229 81.7
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 7.9e-97 357.5 231 81.0
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 2.5e-95 352.4 228 81.1
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.6e-94 349.7 223 83.4
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 9.0e-93 344.0 295 65.1
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.8e-88 329.7 233 77.7
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 6.7e-88 327.8 192 89.6
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.5e-87 325.9 207 80.2
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 3.4e-84 315.5 215 76.7
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.0e-83 313.9 222 73.9
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 9.1e-77 290.8 189 83.1
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 2.6e-76 289.3 191 82.2
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.5e-76 288.5 180 86.7
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.0e-75 287.3 221 69.7
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 3.0e-72 275.8 158 91.8
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 3.0e-72 275.8 158 91.8
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 3.0e-72 275.8 158 91.1
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.9e-72 275.4 161 90.7
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 3.9e-72 275.4 181 80.1
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 2.0e-71 273.1 166 86.7
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.3e-70 268.1 186 76.3
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 6.3e-70 268.1 154 90.9
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 2.4e-69 266.2 182 76.4
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.2e-68 263.8 162 85.8
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 2.7e-60 236.1 160 78.1
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 8.8e-56 221.1 124 92.7
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 5.4e-53 211.8 159 74.8
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.3e-43 180.6 110 89.1
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 5.6e-42 175.3 103 89.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 4.7e-41 172.2 96 93.8
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.3e-35 153.3 158 56.3
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.3e-34 149.1 88 90.9
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.6e-28 130.6 129 58.9
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 3.1e-24 116.3 78 82.1
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 5.2e-24 115.5 206 37.4
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 9.2e-21 104.8 57 87.7
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 9.6e-18 94.7 63 73.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.4e-15 85.9 66 68.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 3.8e-14 82.8 65 64.6
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 2.8e-09 66.6 44 75.0


User provided reference genes

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