Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 6.8e-57 223.8 114 100.0
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 5.0e-44 181.0 115 82.6
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 1.1e-43 179.9 115 82.6
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 5.6e-43 177.6 132 75.8
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 2.4e-38 162.2 117 76.1
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 3.2e-38 161.8 119 74.8
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 4.1e-38 161.4 116 74.1
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 1.6e-34 149.4 119 66.4
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 4.7e-34 147.9 119 63.9
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 1.4e-33 146.4 117 67.5
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 1.8e-33 146.0 122 64.8
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.0e-33 144.8 117 66.7
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 6.8e-33 144.1 114 64.9
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 2.6e-32 142.1 117 65.0
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 3.4e-32 141.7 114 64.9
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 2.2e-31 139.0 116 63.8
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 4.9e-31 137.9 116 62.9
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 4.9e-31 137.9 116 62.9
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 1.4e-30 136.3 115 60.9
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 7.1e-30 134.0 116 65.5
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 4.6e-29 131.3 116 60.3
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 1.0e-28 130.2 116 62.1
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.0e-28 130.2 116 62.1
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.3e-28 129.8 116 61.2
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 2.3e-28 129.0 115 61.7
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 3.9e-28 128.3 114 61.4
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 1.5e-27 126.3 117 59.0
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 2.5e-27 125.6 114 60.5
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 3.3e-27 125.2 114 60.5
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 7.3e-27 124.0 113 55.8
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 9.6e-27 123.6 115 60.0
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 9.6e-27 123.6 120 55.8
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 6.2e-26 120.9 114 57.0
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 1.8e-25 119.4 113 57.5
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 1.8e-25 119.4 113 57.5
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 1.8e-25 119.4 114 58.8
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 3.1e-25 118.6 115 59.1
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 3.1e-25 118.6 114 52.6
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 4.0e-25 118.2 115 59.1
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 5.2e-25 117.9 112 55.4
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 6.9e-25 117.5 113 53.1
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 1.5e-24 116.3 117 53.0
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.5e-24 116.3 120 56.7
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 3.4e-24 115.2 110 54.5
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 7.6e-24 114.0 113 57.5
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 2.2e-23 112.5 117 53.8
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 6.4e-23 110.9 114 53.5
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 8.4e-23 110.5 116 52.6
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.1e-22 110.2 103 58.3
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 2.4e-22 109.0 116 48.3
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 3.2e-22 108.6 114 56.1
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 3.2e-22 108.6 113 54.0
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 4.2e-22 108.2 116 50.9
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 4.2e-22 108.2 114 50.9
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 5.4e-22 107.8 104 54.8
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 7.1e-22 107.5 113 54.0
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 1.6e-21 106.3 98 53.1
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 2.1e-21 105.9 115 52.2
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 2.7e-21 105.5 112 50.0
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 4.6e-21 104.8 105 51.4
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 4.6e-21 104.8 98 58.2
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 4.6e-21 104.8 113 48.7
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 1.0e-20 103.6 118 46.6
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 1.0e-20 103.6 111 49.5
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 3.0e-20 102.1 112 53.6
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 8.7e-20 100.5 117 51.3
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 1.5e-19 99.8 117 48.7
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 1.5e-19 99.8 117 51.3
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 1.9e-19 99.4 100 51.0
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 2.5e-19 99.0 76 64.5
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 3.3e-19 98.6 114 50.9
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 5.6e-19 97.8 130 47.7
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 5.6e-19 97.8 114 50.0
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 7.3e-19 97.4 115 49.6
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 7.3e-19 97.4 113 48.7
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 9.6e-19 97.1 115 49.6
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 9.6e-19 97.1 118 47.5
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 1.6e-18 96.3 119 47.9
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 2.1e-18 95.9 113 49.6
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 2.8e-18 95.5 73 64.4
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 3.6e-18 95.1 113 47.8
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 3.6e-18 95.1 131 45.8
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 6.2e-18 94.4 111 47.7
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.1e-17 93.6 118 48.3
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.1e-17 93.6 118 48.3
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 1.1e-17 93.6 115 48.7
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 1.4e-17 93.2 115 47.0
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 9.9e-16 87.0 114 45.6
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 1.9e-14 82.8 120 44.2
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 2.4e-14 82.4 92 50.0
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 5.4e-14 81.3 114 47.4
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 6.0e-13 77.8 100 48.0
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 6.0e-13 77.8 113 46.9
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 1.0e-12 77.0 92 51.1
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 2.3e-12 75.9 114 43.9
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 2.3e-12 75.9 126 42.9
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 2.5e-11 72.4 98 42.9
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 5.6e-11 71.2 88 50.0
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 9.6e-11 70.5 98 44.9
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 1.6e-10 69.7 49 69.4
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 2.8e-10 68.9 82 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1089 Anthoceros agrestis HOM05D007094 ORTHO05D008264 3.6e-10 68.6 134 35.1
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 1.1e-09 67.0 98 42.9
Pp3c24_4990 Physcomitrium patens HOM05D007094 ORTHO05D008264 3.1e-09 65.5 125 36.8
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 4.0e-09 65.1 83 41.0
DCAR_029979 Daucus carota HOM05D007094 ORTHO05D008264 2.6e-08 62.4 64 43.8
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 9.9e-08 60.5 78 39.7
Mapoly0029s0132 Marchantia polymorpha HOM05D001703 ORTHO05D005708 1.3e-07 60.1 119 35.3
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 1.3e-07 60.1 83 37.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.7e-07 59.7 56 51.8
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 3.8e-07 58.5 78 34.6
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 3.8e-07 58.5 78 34.6
SalBow6G5897 Salvia bowleyana HOM05D007094 ORTHO05D008264 6.4e-07 57.8 52 50.0
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 3.2e-06 55.5 48 56.2
Haze_25678 Corylus avellana HOM05D007094 ORTHO05D008264 5.5e-06 54.7 115 38.3
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 7.1e-06 54.3 79 34.2


User provided reference genes

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