Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 0.0e+00 2151.3 1612 100.0
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 0.0e+00 1728.0 1639 83.5
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 0.0e+00 1550.8 1655 66.2
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 0.0e+00 1521.5 1657 64.7
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 4.2e-293 1012.3 1146 52.8
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 7.3e-290 1001.5 1097 56.2
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 9.0e-288 994.6 1011 57.1
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 7.4e-282 974.9 1155 51.3
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 2.3e-219 767.3 1167 48.4
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 1.1e-216 758.4 1150 47.3
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.8e-211 741.1 1153 48.3
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 9.0e-163 579.3 1201 36.8
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 3.2e-160 570.9 1216 36.3
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 3.0e-158 564.3 1220 35.7
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 2.0e-141 508.4 1199 34.9
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 2.6e-138 498.0 1063 35.7
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 3.4e-138 497.7 861 45.3
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.0e-137 496.1 1147 34.2
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 2.2e-137 495.0 1190 34.0
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 7.2e-136 490.0 932 37.8
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.0e-134 486.1 1110 33.8
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.7e-133 479.6 971 36.1
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.3e-132 476.9 969 35.5
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 3.1e-131 474.6 1219 31.4
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 4.1e-131 474.2 1152 33.2
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.0e-131 473.4 971 36.1
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 2.5e-128 464.9 1110 33.2
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 1.6e-127 462.2 1065 36.4
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.5e-125 455.7 1098 34.5
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 2.0e-125 455.3 1097 32.3
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.6e-125 454.9 1132 32.0
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.7e-124 452.2 1185 33.5
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.4e-118 432.6 808 37.6
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 8.8e-118 429.9 1090 33.1
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.2e-117 429.5 1194 30.7
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.6e-117 428.3 1187 29.9
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 2.6e-117 428.3 1014 34.2
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.7e-116 425.6 1194 29.6
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.1e-115 421.4 1202 30.7
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 7.0e-115 420.2 1195 30.6
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.4e-110 406.0 918 34.5
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 1.6e-106 392.5 1052 30.9
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 7.7e-106 390.2 1178 29.1
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.3e-105 388.7 839 34.7
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 2.3e-105 388.7 1063 31.6
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 8.6e-105 386.7 1105 30.1
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.9e-104 385.6 1107 30.4
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.5e-104 385.2 1197 29.7
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 3.3e-104 384.8 823 33.7
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 9.5e-104 383.3 1116 29.5
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.8e-102 379.0 1106 30.3
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.8e-99 369.0 1161 28.5
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 3.9e-97 361.3 762 33.7
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.0e-94 351.3 813 31.9
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.0e-93 349.0 909 33.7
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.4e-91 342.0 1077 30.0
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 3.2e-91 341.7 1212 28.3
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 3.5e-90 338.2 1074 28.7
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.7e-89 335.9 962 28.8
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.3e-89 335.5 1185 29.4
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 3.9e-89 334.7 1117 27.6
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 4.7e-87 327.8 1117 29.1
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.8e-86 323.9 1058 28.1
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 1.5e-85 322.8 285 61.8
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 4.4e-85 321.2 789 30.4
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 5.8e-85 320.9 788 31.7
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 4.9e-84 317.8 654 33.0
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 2.4e-83 315.5 296 60.1
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 1.1e-80 306.6 1047 28.7
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 1.1e-80 306.6 870 31.4
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 1.5e-80 306.2 1004 28.8
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.3e-80 304.7 998 29.0
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 7.3e-80 303.9 1082 26.9
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.8e-79 302.0 1046 28.0
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 6.2e-79 300.8 1056 29.5
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.4e-78 299.7 1028 27.5
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.8e-78 299.3 1103 27.8
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 8.9e-78 297.0 976 27.4
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 5.4e-75 287.7 1018 28.2
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 2.7e-74 285.4 1035 26.7
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 5.1e-73 281.2 1027 28.1
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 8.6e-73 280.4 1012 28.4
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.1e-72 280.0 1012 28.4
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.2e-71 276.6 610 33.3
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 3.6e-71 275.0 1054 28.6
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.1e-70 273.5 1026 29.0
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.4e-70 273.1 1032 28.1
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 5.2e-70 271.2 1018 26.9
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 1.5e-69 269.6 1019 27.3
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 2.9e-68 265.4 926 28.8
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.7e-66 258.8 611 33.2
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.7e-65 256.1 1094 26.2
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 3.9e-65 255.0 699 30.3
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.9e-65 255.0 678 31.7
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.9e-64 252.7 708 29.5
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 5.6e-64 251.1 1040 26.2
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 1.1e-62 246.9 981 26.0
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 2.4e-62 245.7 620 31.1
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.4e-62 245.7 1045 27.1
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 2.9e-60 238.8 982 27.1
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.9e-59 236.1 1047 26.3
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 3.5e-58 231.9 674 28.5
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.7e-57 229.6 1053 25.6
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 2.3e-57 229.2 942 26.0
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 4.9e-52 211.5 491 32.4
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.2e-50 206.8 399 34.8
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.2e-50 206.8 399 34.8
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.2e-50 206.8 399 34.8
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.3e-49 203.4 1019 25.3
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 2.1e-47 196.1 1030 24.8
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 2.9e-44 185.7 786 27.6
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 6.9e-38 164.5 489 30.1
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 7.6e-37 161.0 456 29.6
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 1.4e-35 156.8 214 47.2
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 6.1e-34 151.4 171 50.3
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.8e-30 139.8 1079 22.8
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 3.1e-30 139.0 90 74.4
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 7.2e-27 127.9 603 26.4
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 2.1e-26 126.3 361 27.7
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.4e-25 123.6 303 31.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 3.9e-25 122.1 303 30.4
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 8.8e-25 120.9 383 26.1
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 4.8e-23 115.2 156 40.4
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.4e-22 113.6 307 30.0
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 3.4e-21 109.0 187 42.2
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 4.2e-19 102.1 291 28.9
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.5e-16 93.6 158 34.8
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 3.3e-16 92.4 131 38.2
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 9.7e-16 90.9 237 33.3
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.7e-15 89.0 119 40.3
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.4e-14 87.0 218 28.9
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.6e-13 83.6 155 43.2
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.7e-13 81.3 274 26.6
Medtr5g090215 Medicago truncatula HOM05D005129 ORTHO05D005585 5.0e-12 78.6 162 38.9
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 6.1e-10 71.6 149 38.3
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 6.7e-09 68.2 48 77.1
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.0e-08 66.6 295 26.8
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 2.6e-08 66.2 89 44.9
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 3.7e-07 62.4 147 40.1
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 4.1e-06 58.9 410 22.7


User provided reference genes

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