Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 8.6e-266 919.8 491 100.0
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 5.6e-257 890.6 491 96.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 5.2e-255 884.0 491 96.1
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 9.5e-249 863.2 474 97.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 5.8e-238 827.4 493 89.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 6.4e-237 823.9 492 90.2
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.1e-236 823.2 493 89.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.7e-235 818.5 490 88.6
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 6.6e-234 813.9 490 88.2
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.4e-231 805.4 489 88.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.6e-230 802.0 489 86.7
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-226 789.3 491 86.4
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.2e-221 772.3 489 85.1
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 1.7e-213 746.1 488 82.2
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 1.7e-213 746.1 488 82.2
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 3.2e-212 741.9 497 81.1
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.5e-209 732.3 502 80.5
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 8.1e-208 727.2 494 80.4
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 3.1e-207 725.3 498 78.9
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 9.0e-207 723.8 491 79.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.5e-206 721.5 498 78.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.5e-206 721.5 493 79.3
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.2e-205 719.2 476 82.4
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.9e-205 718.8 499 78.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.6e-203 713.0 493 79.1
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.7e-203 712.2 491 79.0
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.5e-203 711.8 474 82.3
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 4.6e-203 711.4 498 78.1
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-202 709.5 491 78.8
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 2.3e-202 709.1 502 77.1
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 8.7e-202 707.2 494 78.1
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.1e-201 706.8 496 76.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.5e-201 705.7 491 78.4
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.3e-201 704.9 494 77.9
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 9.6e-201 703.7 479 79.3
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.4e-199 699.1 496 75.8
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.1e-199 698.7 490 76.9
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.0e-198 696.0 516 73.8
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.0e-198 696.0 491 77.4
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.1e-196 690.3 466 79.8
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-196 689.9 526 72.2
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.9e-196 689.5 494 76.9
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 2.5e-196 689.1 488 75.8
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 9.3e-196 687.2 491 75.8
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.2e-195 686.8 496 76.0
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.6e-195 686.4 496 75.8
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.0e-194 682.2 514 75.9
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.5e-193 679.1 505 73.7
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 2.2e-192 676.0 498 75.5
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.8e-191 672.9 491 73.3
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 3.1e-191 672.2 497 74.2
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 5.3e-191 671.4 498 74.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.2e-190 670.2 497 75.1
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.5e-190 668.3 495 74.3
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.2e-189 666.0 493 73.0
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.9e-188 662.9 486 75.5
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 5.5e-188 661.4 502 71.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.3e-186 656.0 488 73.0
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.1e-186 654.8 495 73.1
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.5e-185 652.5 497 73.0
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.5e-185 652.5 505 72.1
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.3e-185 652.1 493 70.6
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 4.3e-185 651.7 497 73.0
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 4.8e-184 648.3 492 72.4
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.3e-184 647.9 457 77.0
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 6.3e-184 647.9 497 72.4
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 6.9e-183 644.4 490 72.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.2e-182 643.7 499 71.1
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.6e-182 642.5 500 70.4
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 6.5e-181 637.9 500 70.6
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 6.5e-181 637.9 499 69.9
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 6.5e-181 637.9 500 70.6
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.1e-180 637.1 498 73.5
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 2.5e-180 636.0 497 71.0
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 5.5e-180 634.8 498 70.7
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-179 633.6 503 70.0
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.1e-179 632.9 508 69.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.1e-179 632.9 500 69.6
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 4.7e-179 631.7 500 69.4
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.3e-178 629.4 441 76.2
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 2.3e-178 629.4 489 69.9
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 3.3e-177 625.5 497 69.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 9.7e-177 624.0 508 67.3
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 2.2e-176 622.9 483 70.2
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.2e-176 620.9 480 71.5
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.4e-175 619.4 497 68.6
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 7.0e-175 617.8 499 68.3
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.0e-173 614.0 494 68.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-172 609.8 518 67.2
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 4.2e-172 608.6 509 66.4
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 7.2e-172 607.8 494 67.4
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 2.1e-171 606.3 490 69.4
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 4.7e-171 605.1 496 67.5
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 1.8e-170 603.2 489 67.5
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.4e-169 598.6 416 79.6
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.8e-168 595.1 493 66.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.1e-167 594.0 497 65.2
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.8e-167 593.2 499 67.5
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 2.2e-165 586.3 500 66.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 3.8e-165 585.5 442 74.4
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.0e-161 573.2 490 64.5
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 4.4e-161 572.0 498 64.5
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 8.0e-155 551.2 375 79.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.8e-152 542.7 358 81.3
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 6.3e-152 541.6 534 60.7
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.2e-144 516.5 475 62.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 7.0e-143 511.5 474 59.3
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.3e-141 506.5 474 60.5
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 3.7e-136 489.2 498 59.0
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 3.7e-136 489.2 484 58.5
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 7.0e-135 485.0 484 59.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.6e-126 457.2 375 71.2
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.7e-125 453.8 443 60.5
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.1e-123 446.8 404 62.1
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.8e-122 441.8 388 67.3
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 8.9e-122 441.4 378 62.4
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.1e-114 417.9 482 55.8
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-105 387.5 379 62.0
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.5e-105 387.5 379 62.0
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.7e-96 357.5 202 88.6
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 2.5e-92 343.6 253 77.5
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 9.6e-92 341.7 424 50.2
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.2e-89 334.7 369 53.1
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 7.9e-86 322.0 324 54.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.9e-85 319.7 443 46.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.4e-82 310.5 215 78.6
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.1e-78 297.4 220 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 9.7e-76 288.5 404 42.1
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.6e-57 228.0 264 55.3
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.7e-56 224.6 408 38.2
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.1e-55 221.9 202 62.9
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.2e-54 218.4 395 37.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.4e-50 204.1 164 69.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 7.7e-49 199.1 339 36.6
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 4.1e-42 176.8 132 70.5
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.2e-39 167.2 286 43.7
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.7e-38 164.1 92 90.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 5.2e-37 159.8 87 92.0
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.4e-34 151.0 93 72.0
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.6e-28 131.0 75 84.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.0e-24 117.5 144 52.8
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.5e-23 114.4 185 42.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 8.0e-22 109.4 122 53.3
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.7e-17 94.4 92 54.3
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.3e-16 91.3 66 74.2
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.5e-12 78.6 71 64.8
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.9e-11 73.6 62 62.9
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.9e-11 73.6 62 62.9
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.6e-09 67.0 62 58.1
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 5.1e-08 63.5 69 55.1
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 7.3e-07 59.7 93 36.6
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 3.6e-06 57.4 33 87.9


User provided reference genes

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