Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1767.7 927 100.0
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1698.7 927 95.8
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1621.7 921 92.3
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1544.3 923 87.4
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1538.5 928 87.3
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1536.9 930 85.4
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1528.1 960 83.4
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1501.5 921 85.0
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1492.2 921 82.7
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1469.5 930 82.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1316.6 921 75.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1304.3 917 73.6
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1295.8 922 73.6
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1287.7 922 73.3
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1283.1 996 68.4
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1270.0 922 71.0
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1270.0 921 73.1
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1269.2 922 71.6
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1268.1 923 70.7
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1263.1 922 71.0
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1255.7 920 71.6
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1254.6 913 71.9
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1239.9 922 70.0
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1235.7 920 70.8
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1235.7 920 70.8
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1234.2 922 72.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1230.3 936 68.8
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1224.9 924 69.8
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1224.2 936 68.7
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1221.1 913 69.4
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1204.1 930 67.8
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1203.7 909 69.0
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1199.9 1077 61.8
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1198.3 916 68.0
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1194.5 920 69.7
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1189.1 850 73.3
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1172.1 875 69.6
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1166.8 941 66.6
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1164.4 1086 59.3
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1161.7 921 65.7
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1160.6 921 64.8
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1157.1 924 66.2
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1155.6 918 66.8
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1151.7 936 66.5
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1150.6 915 66.4
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1149.0 918 65.9
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1148.7 918 66.0
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1145.6 924 65.9
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1144.8 915 66.6
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1144.8 912 65.6
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1140.6 916 66.2
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1138.6 927 66.2
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1134.8 924 65.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1133.6 918 66.2
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1133.2 922 64.1
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1132.9 918 66.2
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1132.1 912 65.4
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1128.6 912 64.8
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1120.5 870 66.8
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1115.5 964 62.1
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1113.6 917 65.6
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1111.3 918 65.0
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1087.8 873 65.8
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1086.2 916 63.9
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 6.3e-312 1074.7 924 63.1
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.9e-311 1072.4 988 60.5
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.5e-311 1072.0 944 62.0
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 8.2e-310 1067.0 771 72.4
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 2.6e-308 1062.0 910 63.0
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 4.5e-308 1061.2 915 62.6
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 6.5e-307 1057.4 908 63.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 3.9e-304 1048.1 921 60.5
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 2.5e-303 1045.4 917 61.8
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 1.4e-301 1039.6 922 62.5
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 5.3e-301 1037.7 938 60.7
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 2.0e-300 1035.8 929 62.4
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.6e-300 1035.4 763 70.8
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 2.8e-294 1015.4 919 60.1
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.2e-292 1010.0 874 62.1
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.7e-283 979.5 867 60.4
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.6e-281 971.8 921 57.2
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.4e-280 969.9 923 58.8
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.5e-274 949.9 1152 49.5
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 2.1e-273 946.0 568 83.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.0e-272 941.8 733 69.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.2e-271 940.3 1021 52.9
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.5e-271 939.9 912 57.7
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 7.5e-271 937.6 716 69.6
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 7.8e-260 901.0 639 76.7
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.9e-258 896.3 944 53.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.6e-257 893.3 922 54.0
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.2e-252 877.1 726 63.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.6e-252 876.7 645 69.6
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.1e-248 864.0 775 60.5
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 2.4e-245 852.8 602 72.8
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 3.9e-243 845.5 932 51.2
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.7e-230 803.5 488 82.6
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.6e-217 759.2 563 73.4
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 7.1e-205 718.4 529 71.8
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 9.3e-205 718.0 428 86.9
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 4.0e-171 606.3 436 75.2
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.3e-168 595.9 546 60.8
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 3.6e-164 583.2 925 40.3
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 2.6e-154 550.4 911 42.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 9.8e-154 548.5 469 64.2
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 8.3e-145 518.8 351 75.5
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 9.5e-141 505.4 412 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 7.5e-138 495.7 915 36.5
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 2.0e-135 487.6 301 87.7
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 4.7e-132 476.5 908 36.1
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 2.0e-130 471.1 605 46.4
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 5.2e-123 446.4 941 33.9
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 4.0e-115 420.2 636 42.3
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 8.7e-94 349.4 690 36.7
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.1e-92 344.7 241 76.8
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-91 341.7 573 37.7
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 4.5e-90 337.0 217 88.5
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 4.3e-85 320.5 228 72.4
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 7.9e-79 299.7 280 56.4
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.9e-73 281.2 284 56.7
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 8.5e-73 279.6 604 35.9
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 6.3e-68 263.5 132 99.2
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 3.0e-62 244.6 263 49.8
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 6.7e-62 243.4 157 77.7
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.6e-50 205.7 154 68.8
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 8.0e-47 193.4 181 59.1
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 2.8e-44 184.9 152 59.9
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 5.9e-42 177.2 124 71.0
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 4.4e-37 161.0 118 67.8
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 5.9e-34 150.6 102 69.6
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 1.2e-31 142.9 151 56.3
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.8e-30 139.0 272 36.0
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.2e-26 126.3 188 39.9
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.0e-26 125.6 147 55.1
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 7.8e-26 123.6 84 79.8
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-23 115.2 120 53.3
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.2e-23 114.0 75 69.3
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.9e-20 105.1 104 56.7
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 6.4e-20 104.0 100 63.0
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 2.1e-18 99.0 166 39.8
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 2.1e-18 99.0 166 39.8
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 8.6e-17 93.6 60 73.3
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 1.5e-13 82.8 90 50.0
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.7e-12 79.3 69 56.5
TPR.G31053 Trifolium pratense HOM05D033735 ORTHO05D410983 2.2e-12 79.0 214 29.0
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.2e-11 75.1 73 61.6
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 4.1e-11 74.7 67 53.7
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 7.1e-11 73.9 65 56.9
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 2.1e-10 72.4 241 28.6
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 2.7e-10 72.0 109 43.1
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 6.0e-10 70.9 91 45.1
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.0e-09 70.1 113 38.1
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 3.9e-09 68.2 90 44.4
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 3.1e-06 58.5 83 48.2
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 5.2e-06 57.8 474 22.4
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 6.8e-06 57.4 163 31.9


User provided reference genes

Program Settings