Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 1.0e-97 360.1 188 100.0
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 3.1e-83 312.0 181 93.9
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 1.6e-82 309.7 188 89.4
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 2.3e-78 295.8 188 85.6
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 4.4e-69 265.0 185 77.3
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 4.1e-67 258.5 187 78.6
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 9.1e-67 257.3 187 78.1
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 4.9e-60 235.0 174 78.2
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 7.8e-58 227.6 189 71.4
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 4.3e-56 221.9 187 69.0
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 4.3e-56 221.9 192 68.2
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 4.7e-55 218.4 189 66.7
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 8.0e-55 217.6 187 66.3
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 1.4e-54 216.9 186 65.6
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.4e-54 216.9 181 69.1
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.4e-54 216.9 189 67.7
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 2.3e-54 216.1 187 67.4
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 3.4e-53 212.2 165 71.5
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 3.4e-53 212.2 190 63.7
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.3e-52 210.3 185 65.9
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 1.3e-52 210.3 183 66.1
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 1.7e-52 209.9 157 73.9
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 1.7e-52 209.9 187 65.8
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.2e-52 209.5 188 65.4
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.9e-52 209.1 191 63.9
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 2.9e-52 209.1 184 65.2
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 8.3e-52 207.6 185 64.9
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 8.3e-52 207.6 184 64.1
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-51 206.5 166 70.5
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 2.4e-51 206.1 185 65.4
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 7.0e-51 204.5 171 69.6
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 1.6e-50 203.4 184 63.6
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 3.5e-50 202.2 181 65.7
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 4.6e-50 201.8 225 55.1
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 1.0e-49 200.7 186 61.3
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 1.7e-49 199.9 178 65.7
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 1.7e-49 199.9 189 63.0
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 2.3e-49 199.5 189 63.5
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 3.9e-49 198.7 159 69.2
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 3.9e-49 198.7 194 63.4
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 3.9e-49 198.7 183 65.0
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 6.6e-49 198.0 160 66.9
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 6.6e-49 198.0 194 61.9
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 6.6e-49 198.0 191 61.8
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 6.6e-49 198.0 187 65.2
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 8.6e-49 197.6 181 63.5
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 1.5e-48 196.8 175 65.7
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 1.9e-48 196.4 192 64.1
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 2.5e-48 196.1 186 62.9
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.3e-48 195.7 219 55.3
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 4.3e-48 195.3 178 65.2
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 5.6e-48 194.9 118 85.6
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 9.5e-48 194.1 186 62.9
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 9.5e-48 194.1 190 62.6
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 6.2e-47 191.4 190 61.6
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 8.0e-47 191.0 177 64.4
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 4.0e-46 188.7 125 82.4
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 6.8e-46 188.0 186 60.2
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 4.4e-45 185.3 118 82.2
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 1.3e-44 183.7 192 57.8
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 6.4e-44 181.4 143 71.3
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.9e-43 179.9 212 57.1
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 2.4e-43 179.5 185 58.4
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 2.4e-43 179.5 185 58.4
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 2.4e-43 179.5 185 58.4
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 9.2e-43 177.6 192 59.9
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 1.2e-42 177.2 191 58.1
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 1.6e-42 176.8 201 58.2
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 2.7e-42 176.0 185 59.5
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.5e-42 175.6 121 77.7
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 3.5e-42 175.6 130 73.8
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 1.0e-41 174.1 191 58.1
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 1.0e-41 174.1 192 58.3
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.0e-41 174.1 133 75.2
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 1.3e-41 173.7 169 63.3
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 1.7e-41 173.3 190 56.8
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 3.0e-41 172.6 124 76.6
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 3.0e-41 172.6 190 55.3
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 6.6e-41 171.4 133 73.7
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 1.1e-40 170.6 197 54.3
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 2.5e-40 169.5 122 77.0
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 4.3e-40 168.7 184 57.6
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 5.6e-40 168.3 98 89.8
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 9.5e-40 167.5 194 54.6
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 9.5e-40 167.5 186 54.8
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 4.0e-38 162.2 124 68.5
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 5.2e-38 161.8 184 57.1
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 6.8e-38 161.4 190 56.8
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 4.9e-36 155.2 160 59.4
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 1.4e-35 153.7 102 81.4
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 3.2e-35 152.5 175 54.9
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 3.2e-35 152.5 87 87.4
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 5.1e-33 145.2 170 54.1
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 1.9e-32 143.3 205 49.8
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 1.9e-32 143.3 205 49.8
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 4.7e-31 138.7 135 59.3
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 6.2e-31 138.3 188 50.5
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 2.6e-29 132.9 127 59.1
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 2.9e-28 129.4 128 56.2
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 1.4e-27 127.1 124 62.1
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 1.4e-27 127.1 120 61.7
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.9e-27 126.7 97 73.2
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 5.4e-27 125.2 124 62.1
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 3.5e-26 122.5 159 45.9
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.6e-25 117.9 83 75.9
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.1e-22 110.9 81 75.3
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.1e-22 110.9 81 75.3
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.9e-20 102.8 105 59.0
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 4.2e-19 99.0 145 42.8
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.7e-17 93.6 91 58.2
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 5.1e-17 92.0 140 44.3
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 1.1e-16 90.9 80 63.8
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 3.3e-16 89.4 122 44.3
Psat2g016880 Pisum sativum HOM05D006899 ORTHO05D008566 2.4e-11 73.2 91 57.1
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 9.3e-11 71.2 90 47.8
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 2.1e-10 70.1 69 47.8


User provided reference genes

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