Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 0.0e+00 2505.7 1383 100.0
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 0.0e+00 2191.4 1388 88.2
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 0.0e+00 1862.4 1408 73.1
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 0.0e+00 1807.7 1410 75.8
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 0.0e+00 1336.2 1412 58.5
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 0.0e+00 1316.2 1412 56.8
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 0.0e+00 1310.4 1427 57.6
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 0.0e+00 1287.3 1427 55.1
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 0.0e+00 1234.6 1409 56.1
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 0.0e+00 1191.0 1477 54.6
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 0.0e+00 1172.1 1444 55.1
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 0.0e+00 1131.3 1410 53.0
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 4.8e-274 948.7 1411 46.4
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 3.3e-238 829.7 1320 45.5
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 7.6e-235 818.5 1321 44.8
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 6.9e-212 742.3 768 57.0
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 7.2e-185 652.5 980 45.1
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 3.7e-181 640.2 1478 40.4
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 2.7e-176 624.0 1478 39.9
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 2.2e-125 454.9 1282 35.6
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 5.8e-102 377.1 1182 32.8
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 4.3e-97 360.9 1176 32.7
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 1.1e-89 336.3 965 33.4
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 3.1e-87 328.2 335 57.3
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 4.6e-83 314.3 1173 31.1
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 6.0e-83 313.9 1258 29.7
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 5.7e-81 307.4 1202 30.1
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 4.5e-78 297.7 1240 28.8
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 4.5e-78 297.7 973 31.9
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.3e-77 296.2 1253 30.1
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 6.5e-77 293.9 1176 31.0
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 4.8e-72 277.7 1233 29.3
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.5e-68 265.4 1162 29.6
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 7.9e-67 260.4 1162 29.5
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 7.9e-67 260.4 944 29.9
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 1.8e-66 259.2 958 31.2
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.0e-66 258.5 1167 29.0
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 4.8e-64 251.1 1442 27.7
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 1.1e-63 250.0 1300 28.8
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 5.3e-63 247.7 817 30.8
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 1.4e-58 233.0 1009 29.2
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 2.3e-58 232.3 1237 26.8
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 3.9e-58 231.5 973 30.0
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 4.4e-57 228.0 1291 29.5
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 7.4e-57 227.3 971 27.3
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 7.4e-57 227.3 1233 26.4
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.2e-51 209.9 1146 27.4
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 3.6e-51 208.4 319 43.9
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.0e-50 206.8 1303 28.0
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 2.2e-48 199.1 808 31.9
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 1.2e-46 193.4 472 35.0
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 3.2e-44 185.3 933 27.2
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.8e-42 179.5 950 26.5
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 1.1e-39 170.2 1077 28.1
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 7.0e-39 167.5 984 26.2
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.1e-36 160.2 1199 26.9
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 2.1e-35 156.0 1271 27.9
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.0e-29 137.1 1210 23.6
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 3.6e-27 128.6 1240 24.1
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 1.8e-26 126.3 956 26.7
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 8.9e-26 124.0 1249 25.5
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 1.4e-23 116.7 945 24.6
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 4.1e-23 115.2 234 36.3
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 2.0e-22 112.8 1260 24.4
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 3.5e-22 112.1 186 40.9
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 1.6e-19 103.2 1257 23.1
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 3.6e-19 102.1 1196 25.7
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 2.6e-17 95.9 1195 24.1
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 2.2e-16 92.8 1241 23.9
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 4.9e-16 91.7 1166 22.0
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 1.1e-15 90.5 140 42.1
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.9e-15 89.7 1262 22.7
TPR.G2256 Trifolium pratense HOM05D006994 ORTHO05D008229 7.1e-15 87.8 396 28.3
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 2.7e-14 85.9 625 23.8
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.3e-13 83.6 204 34.8
Medtr3g452530 Medicago truncatula HOM05D006994 ORTHO05D008229 1.3e-13 83.6 288 28.8
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 3.9e-13 82.0 1125 23.4
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.5e-12 80.1 178 32.0
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.9e-12 79.7 624 23.9
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 1.2e-11 77.0 937 22.7
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 2.8e-11 75.9 144 33.3
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.1e-10 72.4 193 33.2
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 5.2e-10 71.6 1320 21.8
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 8.9e-10 70.9 89 49.4
Psat4g063160 Pisum sativum HOM05D001507 ORTHO05D002108 5.8e-09 68.2 51 66.7
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 9.9e-09 67.4 633 22.9
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.3e-08 67.0 756 22.4
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 1.3e-08 67.0 709 22.7
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 2.2e-08 66.2 701 22.3
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 4.1e-07 62.0 50 56.0
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 7.1e-07 61.2 403 24.6
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 9.2e-07 60.8 65 47.7
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 1.2e-06 60.5 698 22.1
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.7e-06 59.3 181 27.1
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 4.6e-06 58.5 65 49.2
SEGI_04996 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 7.8e-06 57.8 103 35.9
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 7.8e-06 57.8 103 35.9


User provided reference genes

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