Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 7.0e-251 870.2 445 100.0
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.9e-235 818.9 444 93.7
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 6.2e-223 777.3 447 88.4
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 4.2e-195 684.9 441 75.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-194 683.3 441 75.5
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 7.9e-194 680.6 441 75.3
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 8.8e-193 677.2 448 76.6
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.3e-192 674.9 447 76.3
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.4e-190 669.8 446 74.2
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 9.1e-190 667.2 445 73.9
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.2e-189 666.8 445 74.4
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 4.5e-189 664.8 444 73.4
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 5.9e-189 664.5 436 73.9
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 7.7e-189 664.1 437 73.9
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.7e-189 664.1 426 74.9
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.3e-188 663.3 436 75.5
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.3e-188 663.3 436 73.9
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.3e-188 663.3 422 75.6
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.7e-188 662.9 445 74.2
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.7e-188 662.9 443 72.5
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.7e-188 662.9 444 73.4
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.2e-188 662.5 446 74.9
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.9e-188 662.1 434 74.2
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.9e-188 662.1 434 74.2
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.8e-188 661.8 423 75.9
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.8e-188 661.8 420 76.2
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.9e-187 659.4 447 73.2
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.2e-187 658.7 434 74.2
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 7.2e-187 657.5 445 73.9
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.2e-187 657.5 445 71.7
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 2.7e-186 655.6 423 75.4
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 2.7e-186 655.6 436 73.2
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 3.6e-186 655.2 436 73.9
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.6e-186 655.2 436 73.6
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.6e-186 655.2 436 73.6
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.4e-185 653.3 426 74.9
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.4e-185 653.3 444 72.5
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.4e-185 653.3 422 75.6
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.8e-185 652.9 445 72.1
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.8e-185 652.9 436 73.6
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 2.3e-185 652.5 444 72.1
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 3.0e-185 652.1 436 72.7
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.9e-185 651.7 445 71.5
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 6.7e-185 651.0 444 71.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 8.8e-185 650.6 422 75.1
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.8e-185 650.6 436 72.9
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.8e-185 650.6 436 72.9
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 8.8e-185 650.6 434 75.8
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.1e-184 650.2 445 71.7
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.1e-184 650.2 436 73.2
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.5e-184 649.8 431 74.2
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.0e-184 649.4 445 72.1
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.6e-184 649.0 447 73.4
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 4.4e-184 648.3 445 71.7
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.4e-184 648.3 426 73.9
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 5.7e-184 647.9 422 74.6
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 9.7e-184 647.1 422 73.2
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.8e-183 645.6 436 71.6
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.8e-183 645.6 445 72.8
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.8e-183 644.8 436 71.6
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.4e-182 643.3 445 72.1
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.4e-182 643.3 427 74.0
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.4e-182 643.3 422 74.9
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.8e-182 642.9 445 72.1
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.8e-182 642.9 447 71.4
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 2.4e-182 642.5 444 73.4
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 4.1e-182 641.7 445 71.9
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.1e-182 641.7 439 71.1
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 9.1e-182 640.6 468 69.9
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 9.1e-182 640.6 425 71.8
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.5e-181 639.8 447 71.8
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.0e-181 639.4 446 71.1
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.0e-181 639.4 423 73.8
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.0e-181 639.4 445 69.4
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.6e-181 639.0 437 71.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.5e-181 638.6 426 73.7
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 4.5e-181 638.3 435 72.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 5.9e-181 637.9 449 71.0
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 5.9e-181 637.9 445 72.8
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 1.7e-180 636.3 423 73.5
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 2.2e-180 636.0 443 70.9
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 2.9e-180 635.6 422 73.0
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.0e-180 634.8 446 70.6
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 8.5e-180 634.0 422 72.7
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.1e-179 633.6 452 67.3
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.1e-179 633.6 444 69.6
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.5e-179 632.5 446 69.7
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.2e-179 632.1 447 69.4
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 4.2e-179 631.7 446 70.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 9.4e-179 630.6 426 73.0
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.6e-178 629.8 445 69.9
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.6e-178 628.6 421 72.4
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.7e-178 628.2 446 70.4
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 6.1e-178 627.9 423 72.1
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 6.1e-178 627.9 446 70.2
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 6.1e-178 627.9 424 72.4
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.8e-177 626.3 450 70.2
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 3.0e-177 625.5 445 68.8
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 8.8e-177 624.0 442 68.3
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.0e-176 622.9 446 69.1
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.6e-176 622.5 450 68.4
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 3.3e-176 622.1 423 72.6
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 4.4e-176 621.7 446 69.3
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 7.4e-176 620.9 445 69.0
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.3e-175 620.2 423 70.9
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.7e-175 619.8 445 69.0
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.2e-175 619.4 445 69.0
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.4e-174 615.9 440 68.2
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 5.3e-174 614.8 401 74.8
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.6e-173 612.5 401 74.3
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.9e-172 609.0 423 70.2
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.9e-172 609.0 423 70.4
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.5e-171 606.7 423 70.2
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 2.5e-171 605.9 423 70.2
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 9.4e-171 604.0 401 72.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.6e-170 603.2 423 69.7
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.6e-170 603.2 423 69.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.0e-169 600.5 423 69.5
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.0e-169 600.5 405 72.1
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.4e-169 600.1 423 70.0
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.8e-169 599.7 423 70.0
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.3e-169 599.4 423 70.0
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.0e-169 598.6 423 68.1
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 4.0e-169 598.6 423 70.0
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 9.7e-168 594.0 422 67.5
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.7e-167 593.2 423 68.6
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-166 590.5 422 67.3
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.4e-166 590.1 422 68.2
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.1e-166 588.6 426 68.3
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 7.7e-165 584.3 425 67.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 4.2e-163 578.6 368 75.0
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.6e-162 576.6 422 67.8
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 4.7e-162 575.1 450 64.4
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.5e-160 570.1 440 64.1
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 5.7e-160 568.2 429 66.4
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.7e-159 565.5 364 74.5
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.4e-158 563.5 424 63.9
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.2e-157 560.5 391 69.6
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 5.9e-157 558.1 357 75.6
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 2.9e-156 555.8 384 71.4
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-155 553.1 385 69.1
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.2e-155 552.0 426 66.7
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.8e-146 522.7 386 68.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.3e-139 499.2 435 60.0
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.9e-137 491.1 423 58.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.9e-134 483.4 421 59.1
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-129 467.2 432 55.3
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.2e-128 464.2 426 58.9
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 5.1e-124 448.7 418 53.8
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 6.4e-119 431.8 439 52.4
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 8.1e-114 414.8 325 63.1
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 3.2e-110 402.9 282 68.1
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.6e-101 374.0 427 48.5
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.3e-100 370.9 232 76.3
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.1e-97 359.8 272 65.1
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 2.2e-95 353.6 229 75.1
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 4.3e-91 339.3 426 42.5
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.3e-90 337.8 420 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 6.7e-84 315.5 381 43.8
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.5e-64 251.1 271 53.5
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 8.2e-58 228.8 166 70.5
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 4.0e-52 209.9 146 71.2
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.2e-36 156.4 122 60.7
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.2e-36 156.4 113 66.4
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 5.4e-33 146.4 420 29.0
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 7.0e-33 146.0 85 78.8
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 9.2e-33 145.6 96 71.9
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 7.5e-27 125.9 438 26.5
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 7.3e-22 109.4 75 68.0
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 3.3e-14 84.0 55 72.7
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 3.4e-11 73.9 54 70.4
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.3e-07 61.2 199 26.6
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.3e-07 61.2 179 26.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 8.6e-07 59.3 201 26.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.5e-06 57.8 204 26.5
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.3e-06 57.0 335 23.3


User provided reference genes

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