Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.0e-41 172.2 96 100.0
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.4e-31 138.7 96 84.4
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 3.0e-21 105.1 79 70.9
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 3.0e-21 105.1 81 67.9
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 5.1e-21 104.4 83 67.5
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 8.6e-21 103.6 90 65.6
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.1e-20 103.2 82 68.3
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.9e-20 102.4 86 66.3
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 5.6e-20 100.9 97 60.8
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 7.3e-20 100.5 83 67.5
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 8.1e-19 97.1 82 64.6
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 8.1e-19 97.1 82 64.6
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.4e-18 96.3 83 65.1
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 6.8e-18 94.0 84 63.1
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.2e-17 93.2 81 63.0
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.2e-17 93.2 83 65.1
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 4.4e-17 91.3 81 60.5
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 5.8e-17 90.9 89 58.4
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 9.9e-17 90.1 79 64.6
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 9.9e-17 90.1 92 57.6
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 9.9e-17 90.1 80 60.0
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.3e-16 89.7 97 59.8
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 1.3e-16 89.7 84 58.3
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-16 89.4 82 57.3
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 4.9e-16 87.8 81 61.7
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 4.9e-16 87.8 85 58.8
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 6.4e-16 87.4 79 60.8
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 6.4e-16 87.4 79 62.0
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 6.4e-16 87.4 84 58.3
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 6.4e-16 87.4 84 56.0
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 8.3e-16 87.0 81 60.5
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-15 86.7 90 55.6
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-15 86.7 90 55.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.1e-15 86.7 82 61.0
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.9e-15 85.9 82 61.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.9e-15 85.9 83 57.8
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.9e-15 85.9 82 59.8
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.4e-15 85.5 77 59.7
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 3.2e-15 85.1 81 56.8
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.2e-15 85.1 82 61.0
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.2e-15 85.1 81 59.3
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 4.1e-15 84.7 83 57.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 5.4e-15 84.3 87 55.2
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.4e-15 84.3 95 53.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 7.1e-15 84.0 97 57.7
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 7.1e-15 84.0 79 62.0
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 9.2e-15 83.6 84 54.8
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 9.2e-15 83.6 91 52.7
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.2e-14 83.2 82 58.5
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.2e-14 83.2 85 56.5
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.2e-14 83.2 97 56.7
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.6e-14 82.8 88 56.8
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.6e-14 82.8 84 57.1
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.6e-14 82.8 81 58.0
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.1e-14 82.4 91 54.9
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 2.1e-14 82.4 81 59.3
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 2.7e-14 82.0 81 56.8
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 2.7e-14 82.0 86 57.0
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 2.7e-14 82.0 81 54.3
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.5e-14 81.6 90 54.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.5e-14 81.6 90 54.4
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 3.5e-14 81.6 81 59.3
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.5e-14 81.6 81 59.3
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.5e-14 81.6 87 59.8
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 4.6e-14 81.3 82 57.3
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.6e-14 81.3 85 55.3
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 4.6e-14 81.3 82 58.5
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 6.0e-14 80.9 87 57.5
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 6.0e-14 80.9 79 58.2
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.8e-14 80.5 90 53.3
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 7.8e-14 80.5 81 55.6
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.0e-13 80.1 79 60.8
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.0e-13 80.1 91 51.6
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.0e-13 80.1 91 51.6
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.3e-13 79.7 84 54.8
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.3e-13 79.7 81 56.8
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-13 79.3 82 53.7
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.7e-13 79.3 90 52.2
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.7e-13 79.3 85 56.5
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.7e-13 79.3 81 54.3
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.7e-13 79.3 80 55.0
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 2.3e-13 79.0 83 56.6
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 3.0e-13 78.6 83 54.2
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.0e-13 78.6 82 56.1
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.9e-13 78.2 85 56.5
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.1e-13 77.8 81 56.8
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.1e-13 77.8 85 52.9
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 6.6e-13 77.4 85 56.5
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.6e-13 77.4 80 55.0
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 6.6e-13 77.4 75 54.7
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.6e-13 77.4 81 56.8
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 6.6e-13 77.4 89 55.1
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 8.6e-13 77.0 79 59.5
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 8.6e-13 77.0 79 58.2
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 8.6e-13 77.0 76 59.2
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.9e-12 75.9 81 56.8
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 2.5e-12 75.5 79 57.0
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.5e-12 75.5 81 56.8
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 3.3e-12 75.1 80 51.2
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 5.6e-12 74.3 85 54.1
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 5.6e-12 74.3 84 53.6
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 5.6e-12 74.3 83 53.0
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 7.3e-12 73.9 81 55.6
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.6e-12 73.6 88 52.3
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-11 73.2 84 52.4
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-11 73.2 84 52.4
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.6e-11 72.8 82 56.1
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.6e-11 72.8 82 56.1
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.6e-11 72.8 73 54.8
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 2.1e-11 72.4 85 50.6
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.8e-11 72.0 80 51.2
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.8e-11 72.0 80 55.0
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 4.7e-11 71.2 82 45.1
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.7e-11 71.2 79 55.7
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.7e-11 71.2 81 54.3
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 6.2e-11 70.9 82 51.2
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 1.4e-10 69.7 78 52.6
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.8e-10 69.3 82 51.2
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.8e-10 69.3 86 50.0
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.4e-10 68.9 55 60.0
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 3.1e-10 68.6 90 47.8
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.2e-10 67.8 81 54.3
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 6.8e-10 67.4 80 52.5
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 2.0e-09 65.9 76 55.3
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 2.0e-09 65.9 76 55.3
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.4e-09 65.1 67 49.3
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 4.4e-09 64.7 60 56.7
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 4.4e-09 64.7 77 50.6
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 4.4e-09 64.7 82 50.0
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 7.6e-09 63.9 75 54.7
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.3e-08 63.2 76 52.6
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.7e-08 62.8 60 53.3
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.2e-08 62.4 58 55.2
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.9e-08 62.0 78 46.2
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.9e-08 61.2 78 50.0
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 4.9e-08 61.2 77 54.5
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 6.4e-08 60.8 84 46.4
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 6.4e-08 60.8 78 43.6
Os10g0509401 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 1.4e-07 59.7 83 48.2
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.9e-07 59.3 88 43.2
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.9e-07 59.3 78 46.2
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.4e-07 58.9 78 44.9
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 3.2e-07 58.5 54 64.8
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 4.2e-07 58.2 78 46.2
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.2e-07 58.2 87 39.1
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 5.4e-07 57.8 78 43.6
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 5.4e-07 57.8 78 42.3
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 5.4e-07 57.8 78 42.3
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.4e-07 57.8 94 45.7
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 7.1e-07 57.4 74 45.9
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 7.1e-07 57.4 78 42.3
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 7.1e-07 57.4 76 48.7
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 9.3e-07 57.0 78 44.9
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 9.3e-07 57.0 78 44.9
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 9.3e-07 57.0 78 41.0
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 9.3e-07 57.0 60 53.3
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 41.0
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 41.0
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 41.0
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 41.0
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 41.0
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 43.6
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 1.6e-06 56.2 78 43.6
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 1.6e-06 56.2 78 43.6
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 1.6e-06 56.2 78 43.6
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.6e-06 56.2 87 37.9
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.6e-06 56.2 93 41.9
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 2.1e-06 55.8 58 48.3
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.7e-06 55.5 78 42.3
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 2.7e-06 55.5 78 48.7
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 2.7e-06 55.5 91 45.1
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 2.7e-06 55.5 83 44.6
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 3.5e-06 55.1 72 48.6
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 3.5e-06 55.1 78 42.3
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 3.5e-06 55.1 78 42.3
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.5e-06 55.1 86 43.0
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.6e-06 54.7 78 42.3
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 6.0e-06 54.3 69 50.7
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 7.8e-06 53.9 77 48.1


User provided reference genes

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