Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 2.2e-46 188.7 102 100.0
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 2.5e-26 122.1 89 77.5
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 5.2e-24 114.4 86 73.3
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 9.8e-23 110.2 86 69.8
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 8.3e-22 107.1 89 68.5
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 1.4e-21 106.3 86 68.6
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 4.5e-20 101.3 86 65.1
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 8.0e-17 90.5 81 63.0
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 8.0e-17 90.5 81 59.3
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.4e-16 89.7 79 63.3
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.4e-16 89.7 79 63.3
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 3.0e-16 88.6 66 68.2
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 3.0e-16 88.6 81 56.8
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 4.0e-16 88.2 68 67.6
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 1.5e-15 86.3 81 56.8
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 2.0e-15 85.9 82 58.5
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 4.4e-15 84.7 68 64.7
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 5.8e-15 84.3 73 58.9
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 7.5e-15 84.0 87 55.2
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 1.3e-14 83.2 87 55.2
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 1.3e-14 83.2 65 63.1
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 1.7e-14 82.8 68 63.2
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.7e-14 82.8 66 62.1
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 2.2e-14 82.4 92 50.0
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 3.7e-14 81.6 80 56.2
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 6.4e-14 80.9 82 54.9
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 1.1e-13 80.1 87 52.9
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.1e-13 80.1 88 52.3
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 1.4e-13 79.7 68 61.8
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 1.4e-13 79.7 68 60.3
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 1.8e-13 79.3 87 52.9
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 1.8e-13 79.3 87 51.7
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 3.2e-13 78.6 87 52.9
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 3.2e-13 78.6 84 52.4
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 5.4e-13 77.8 87 51.7
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 5.4e-13 77.8 87 51.7
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 5.4e-13 77.8 87 51.7
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 5.4e-13 77.8 76 56.6
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 7.0e-13 77.4 44 88.6
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 9.2e-13 77.0 68 57.4
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 1.2e-12 76.6 87 51.7
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 2.7e-12 75.5 70 54.3
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 3.5e-12 75.1 87 51.7
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 3.5e-12 75.1 65 58.5
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 3.5e-12 75.1 79 48.1
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.5e-12 75.1 110 43.6
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.5e-12 75.1 110 43.6
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 3.5e-12 75.1 70 58.6
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 3.5e-12 75.1 73 54.8
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 6.0e-12 74.3 84 52.4
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.3e-11 73.2 85 49.4
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 2.3e-11 72.4 87 50.6
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 2.3e-11 72.4 67 55.2
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 2.3e-11 72.4 71 54.9
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 3.0e-11 72.0 84 47.6
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 3.9e-11 71.6 87 51.7
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 5.0e-11 71.2 70 55.7
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 5.0e-11 71.2 75 50.7
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 6.6e-11 70.9 84 48.8
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 8.6e-11 70.5 72 52.8
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 1.1e-10 70.1 71 54.9
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 1.1e-10 70.1 68 51.5
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 1.5e-10 69.7 70 54.3
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.3e-10 68.6 91 47.3
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 3.3e-10 68.6 62 58.1
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 3.3e-10 68.6 73 52.1
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 7.3e-10 67.4 88 44.3
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 9.5e-10 67.0 88 44.3
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 2.1e-09 65.9 77 50.6
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 6.2e-09 64.3 75 46.7
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 8.0e-09 63.9 79 43.0
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 8.0e-09 63.9 65 50.8
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 1.4e-08 63.2 73 46.6
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 3.1e-08 62.0 87 44.8
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 3.1e-08 62.0 70 47.1
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 4.0e-08 61.6 87 46.0
SEGI_16653 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 4.0e-08 61.6 63 49.2
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 4.0e-08 61.6 62 50.0
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 5.2e-08 61.2 70 47.1
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 6.8e-08 60.8 82 42.7
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 6.8e-08 60.8 75 45.3
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 1.2e-07 60.1 106 38.7
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 1.2e-07 60.1 63 47.6
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 1.7e-06 56.2 91 38.5


User provided reference genes

Program Settings