Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.0e-163 580.1 320 100.0
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 5.6e-133 478.0 326 85.0
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.9e-112 409.8 325 72.9
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 2.7e-103 379.4 324 68.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.4e-85 318.9 318 61.9
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.1e-83 314.3 319 58.6
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 6.9e-83 311.6 319 58.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 5.2e-78 295.4 324 61.7
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 6.7e-78 295.0 320 53.8
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.1e-77 294.3 318 57.5
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.7e-77 292.0 304 57.6
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 9.7e-77 291.2 317 56.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 8.2e-76 288.1 324 54.3
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 9.1e-75 284.6 323 53.9
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 7.7e-74 281.6 318 54.4
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.9e-73 279.6 375 49.1
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.5e-72 277.3 323 53.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.9e-72 276.9 325 52.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.5e-72 276.6 324 54.3
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 9.4e-72 274.6 321 52.6
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-71 272.7 323 52.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.0e-70 271.2 325 52.6
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.0e-70 271.2 322 52.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.4e-70 270.8 370 49.2
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 3.0e-70 269.6 324 53.1
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.0e-69 266.9 323 52.3
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.3e-69 266.2 323 53.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 7.5e-69 265.0 323 52.6
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.5e-69 265.0 326 52.8
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 9.7e-69 264.6 323 52.6
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.8e-68 263.1 323 51.4
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.8e-68 262.3 315 50.8
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.3e-68 261.9 323 51.7
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 6.3e-68 261.9 324 50.9
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.2e-68 261.5 323 51.1
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.1e-67 261.2 319 49.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.4e-67 260.8 319 48.9
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.8e-67 260.4 269 52.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.1e-67 259.2 323 50.5
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 5.3e-67 258.8 322 51.2
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.0e-67 258.5 322 50.3
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.1e-67 258.1 322 50.3
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-66 256.9 324 50.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.7e-66 256.5 320 50.0
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 4.5e-66 255.8 323 52.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 4.5e-66 255.8 321 50.2
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.9e-66 255.4 323 54.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 5.9e-66 255.4 323 49.5
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 7.7e-66 255.0 324 48.8
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.8e-65 252.7 326 49.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 5.0e-65 252.3 322 50.3
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.0e-65 252.3 321 49.8
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.5e-65 251.9 324 50.3
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.1e-64 251.1 321 49.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.9e-64 250.4 322 47.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.2e-64 249.6 322 52.8
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.2e-64 249.2 323 50.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 5.5e-64 248.8 319 51.7
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.6e-63 247.3 328 55.2
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.6e-63 246.1 322 55.3
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.7e-63 245.7 319 48.9
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 6.1e-63 245.4 321 49.2
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 8.0e-63 245.0 320 49.4
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.2e-62 242.3 288 52.1
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.6e-61 240.0 325 46.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.6e-61 240.0 288 51.4
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 5.7e-61 238.8 384 46.1
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 7.5e-61 238.4 324 47.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.8e-60 236.5 325 51.4
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.1e-59 234.6 322 47.8
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.8e-59 233.8 329 45.6
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.4e-59 233.4 319 46.4
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 7.0e-59 231.9 384 43.5
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 9.1e-59 231.5 323 46.4
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.0e-58 230.3 324 47.2
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 2.0e-58 230.3 323 48.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 2.7e-58 229.9 319 46.4
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.5e-58 229.2 324 47.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 5.9e-58 228.8 322 45.0
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.7e-57 227.3 324 46.6
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.9e-57 226.5 340 43.2
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.9e-57 226.5 327 46.8
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 8.6e-57 224.9 323 49.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.5e-56 224.2 323 49.8
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 7.2e-56 221.9 324 46.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 7.2e-56 221.9 328 44.8
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.1e-55 220.3 276 53.3
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.8e-55 219.9 326 50.3
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.8e-55 219.9 319 44.2
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.8e-55 219.9 319 44.2
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.8e-55 219.9 335 48.1
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.0e-53 213.8 324 48.5
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.6e-53 213.4 320 43.8
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 7.5e-53 211.8 324 42.9
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 4.9e-52 209.1 324 42.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.4e-51 207.6 273 44.7
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.1e-51 206.5 398 39.7
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.2e-50 204.5 331 48.0
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.5e-50 202.6 321 39.9
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 7.8e-50 201.8 353 42.5
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.3e-49 201.1 330 47.3
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-49 200.3 322 42.2
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-48 198.0 322 46.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.5e-48 197.6 380 42.1
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.9e-48 197.2 322 46.0
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.6e-48 195.7 322 43.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.1e-47 193.7 322 43.8
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.7e-47 192.6 319 43.3
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 6.1e-47 192.2 322 44.7
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.4e-46 191.0 352 43.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.8e-46 188.7 302 41.7
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 8.9e-46 188.3 322 43.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 7.5e-45 185.3 306 44.8
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 9.8e-45 184.9 304 46.4
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 6.4e-44 182.2 295 41.0
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 7.0e-43 178.7 303 38.9
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.2e-42 177.9 266 41.7
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.6e-42 177.6 259 46.7
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.0e-42 177.2 304 41.4
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 2.7e-42 176.8 267 41.2
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.6e-42 176.0 305 40.7
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.0e-41 173.3 266 41.0
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 4.3e-40 169.5 310 38.1
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.7e-39 166.0 258 49.2
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.1e-38 164.9 377 39.3
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-38 164.5 314 37.6
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-38 164.5 314 37.6
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.4e-38 164.5 193 49.2
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.0e-38 162.9 256 49.6
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-35 154.8 321 38.9
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.4e-35 153.7 321 38.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-34 150.6 295 36.9
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-30 137.5 147 53.1
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.1e-30 136.7 316 34.5
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.8e-30 135.6 165 53.9
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.9e-30 135.2 165 53.9
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.2e-29 134.8 307 40.1
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 2.6e-29 133.7 148 52.7
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 9.9e-29 131.7 246 39.4
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.7e-28 131.0 207 39.6
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 6.4e-28 129.0 317 33.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 7.8e-26 122.1 151 47.7
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.3e-25 121.3 271 36.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.7e-25 120.9 324 30.6
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 6.6e-25 119.0 161 47.2
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.9e-24 117.5 152 48.7
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.9e-24 117.5 253 43.1
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 7.3e-24 115.5 206 38.3
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-23 114.0 156 48.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 4.7e-23 112.8 228 39.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 5.2e-22 109.4 300 36.0
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-21 108.2 124 51.6
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.0e-21 107.5 260 32.3
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.6e-21 107.1 159 39.0
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.4e-21 106.3 180 44.4
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-20 103.6 122 53.3
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.9e-19 100.9 188 41.5
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.4e-19 99.4 378 30.4
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 5.4e-19 99.4 122 53.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 7.1e-19 99.0 219 36.5
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.5e-16 90.5 116 52.6
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 2.5e-16 90.5 190 37.9
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 6.2e-15 85.9 86 53.5
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.9e-14 82.4 216 33.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.6e-13 80.5 97 49.5
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 3.8e-12 76.6 183 31.1
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 3.8e-12 76.6 183 31.1
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 6.4e-12 75.9 85 55.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 8.4e-12 75.5 125 39.2
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.0e-09 68.6 232 28.9
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.0e-09 68.6 232 28.9
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 3.3e-08 63.5 315 26.7
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 4.3e-08 63.2 86 40.7
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.6e-08 62.8 196 29.6
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 9.6e-08 62.0 59 54.2
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 3.6e-07 60.1 217 30.0
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.0e-06 56.6 87 41.4
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 6.9e-06 55.8 40 62.5
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 9.0e-06 55.5 99 41.4


User provided reference genes

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