Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 3.0e-96 355.1 177 100.0
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.4e-80 303.1 168 90.5
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 9.2e-77 290.4 164 85.4
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 5.8e-71 271.2 167 79.6
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.7e-70 269.6 171 81.9
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 7.8e-68 260.8 167 77.2
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 6.6e-67 257.7 167 77.2
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 4.3e-66 255.0 161 77.0
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.5e-63 246.5 168 73.2
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 5.8e-63 244.6 159 76.1
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 1.7e-62 243.0 159 75.5
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 4.1e-61 238.4 158 73.4
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 4.1e-61 238.4 158 74.7
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 2.1e-60 236.1 165 71.5
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 2.1e-60 236.1 169 69.8
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 8.3e-54 214.2 152 67.1
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 9.6e-50 200.7 162 58.6
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 2.1e-49 199.5 144 61.8
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 2.4e-48 196.1 161 60.2
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 3.1e-48 195.7 163 61.3
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 5.2e-48 194.9 165 60.0
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 6.8e-48 194.5 148 64.2
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 1.2e-47 193.7 161 60.2
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 1.5e-47 193.4 162 55.6
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 3.4e-47 192.2 161 58.4
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 3.4e-47 192.2 162 56.2
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 4.4e-47 191.8 161 56.5
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 5.8e-47 191.4 161 56.5
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.3e-46 190.3 148 60.1
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 4.9e-46 188.3 161 56.5
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.4e-45 186.8 152 55.3
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 1.4e-45 186.8 161 58.4
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 1.9e-45 186.4 141 61.7
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 4.2e-45 185.3 147 56.5
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 4.2e-45 185.3 165 55.2
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 5.4e-45 184.9 162 53.7
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 9.3e-45 184.1 166 51.8
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 9.3e-45 184.1 169 55.0
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 1.2e-44 183.7 165 53.9
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 2.1e-44 183.0 146 58.2
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 3.5e-44 182.2 150 58.7
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 4.6e-44 181.8 151 53.0
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 4.6e-44 181.8 147 60.5
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 7.8e-44 181.0 151 57.0
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.0e-43 180.6 151 53.6
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 1.3e-43 180.3 160 55.0
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.3e-43 180.3 152 57.2
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.7e-43 179.9 146 57.5
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 3.9e-43 178.7 157 56.1
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 5.1e-43 178.3 141 58.9
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 8.7e-43 177.6 146 56.8
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 8.7e-43 177.6 157 55.4
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.1e-42 177.2 143 55.9
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.1e-42 177.2 152 54.6
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 1.1e-42 177.2 143 57.3
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 1.1e-42 177.2 146 56.8
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.9e-42 176.4 173 52.6
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 2.5e-42 176.0 150 55.3
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 9.6e-42 174.1 143 57.3
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 1.3e-41 173.7 143 56.6
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 1.3e-41 173.7 161 50.9
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.3e-41 173.7 131 61.8
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.6e-41 173.3 143 57.3
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.1e-41 172.9 143 57.3
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 2.1e-41 172.9 147 55.1
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 2.8e-41 172.6 134 59.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 4.8e-41 171.8 149 57.0
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 6.2e-41 171.4 143 52.4
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 6.2e-41 171.4 143 56.6
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 6.2e-41 171.4 143 58.0
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 8.1e-41 171.0 147 55.8
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.1e-40 170.6 148 51.4
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.4e-40 170.2 162 51.2
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 2.4e-40 169.5 154 53.2
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 3.1e-40 169.1 137 58.4
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 5.3e-40 168.3 156 52.6
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 6.9e-40 167.9 142 54.9
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 9.0e-40 167.5 132 56.8
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 1.2e-39 167.2 163 52.1
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.5e-39 166.8 171 49.1
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 2.0e-39 166.4 136 58.8
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 2.0e-39 166.4 156 52.6
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 2.6e-39 166.0 142 54.2
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 3.4e-39 165.6 131 56.5
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 4.4e-39 165.2 165 50.9
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 4.4e-39 165.2 171 48.0
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 9.9e-39 164.1 163 49.7
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 1.3e-38 163.7 143 52.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.7e-38 163.3 154 53.2
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.7e-38 163.3 134 53.7
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 3.8e-38 162.2 138 50.7
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 3.8e-38 162.2 137 56.9
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 1.1e-37 160.6 132 53.8
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.9e-37 159.8 135 51.1
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 2.4e-37 159.5 143 51.7
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 4.2e-37 158.7 146 46.6
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 3.5e-36 155.6 143 49.7
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 3.5e-36 155.6 144 53.5
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 1.7e-35 153.3 150 48.7
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 8.7e-35 151.0 167 45.5
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 1.6e-33 146.7 136 50.7
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 2.6e-31 139.4 111 57.7
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 3.4e-31 139.0 131 50.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 9.9e-31 137.5 128 50.0
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 1.7e-30 136.7 118 58.5
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 2.2e-30 136.3 141 51.8
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 2.9e-30 136.0 133 51.1
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 2.9e-30 136.0 144 50.0
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 4.9e-30 135.2 141 52.5
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 1.1e-29 134.0 150 44.7
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.4e-29 132.9 118 56.8
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 1.0e-27 127.5 131 41.2
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 1.3e-27 127.1 131 48.1
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 2.5e-26 122.9 105 53.3
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 4.8e-25 118.6 144 41.0
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 1.8e-24 116.7 104 53.8
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 3.1e-24 115.9 135 41.5
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 8.4e-22 107.8 76 63.2
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 1.3e-19 100.5 143 39.2
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.3e-17 94.0 132 37.9
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 1.4e-16 90.5 96 51.0
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 6.9e-16 88.2 76 53.9
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 9.0e-16 87.8 162 33.3
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 9.0e-16 87.8 64 62.5
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 2.6e-15 86.3 68 58.8
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 1.1e-13 80.9 70 52.9
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 2.5e-13 79.7 76 50.0
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 2.5e-13 79.7 132 34.1
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 2.1e-12 76.6 77 50.6
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 1.1e-10 70.9 55 60.0
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 4.8e-09 65.5 41 63.4
Medtr5g087980 Medicago truncatula HOM05D000678 ORTHO05D002523 1.5e-07 60.5 81 43.2


User provided reference genes

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