Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G171750 Phaseolus vulgaris HOM05D001090 ORTHO05D307364 3.6e-36 156.8 76 100.0
Phvul.009G129400 Phaseolus vulgaris HOM05D001090 ORTHO05D002687 4.2e-08 63.5 33 90.9
HanXRQChr09g0260691 Helianthus annuus HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
MD00G1100600 Malus domestica HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
Nn1g08972 Nelumbo nucifera HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
Prupe.1G490400 Prunus persica HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
TAR628G0124 Trochodendron aralioides HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
VMungo1309G2897 Vigna mungo HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
GSVIVG01008813001 Vitis vinifera HOM05D001090 ORTHO05D002687 1.2e-07 62.0 33 87.9
Glyma.06G116900 Glycine max HOM05D001090 ORTHO05D002687 1.6e-07 61.6 33 87.9
Hma1.2p1_1075F.1_g254480 Hydrangea macrophylla HOM05D001090 ORTHO05D002687 1.6e-07 61.6 32 90.6
MD08G1158400 Malus domestica HOM05D001090 ORTHO05D002687 1.6e-07 61.6 39 76.9
Cpa.g.sc64.147 Carica papaya HOM05D001090 ORTHO05D002687 2.1e-07 61.2 33 87.9
Ah.02g123870 Amaranthus hybridus HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Cc10_g12660 Coffea canephora HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 87.9
DCAR_022875 Daucus carota HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Migut.N03263 Erythranthe guttata HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 87.9
Gohir.A02G110100 Gossypium hirsutum HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Gohir.D03G069000 Gossypium hirsutum HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Gorai.013G107400 Gossypium raimondii HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Lj7A347G45 Lonicera japonica HOM05D001090 ORTHO05D002687 2.7e-07 60.8 39 74.4
MBI03_g28478_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 81.8
Manes.02G167501 Manihot esculenta HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Manes.02G167701 Manihot esculenta HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Oeu051970.1 Olea europaea HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 87.9
Thecc.08G132400 Theobroma cacao HOM05D001090 ORTHO05D002687 2.7e-07 60.8 33 84.8
Duzib093G1991 Durio zibethinus HOM05D001090 ORTHO05D002687 3.5e-07 60.5 32 87.5
Lalb_Chr08g0241141 Lupinus albus HOM05D001090 ORTHO05D002687 3.5e-07 60.5 33 84.8
SGA_v2.0_scaffold28G11973 Striga asiatica HOM05D001090 ORTHO05D002687 3.5e-07 60.5 33 87.9
SGA_v2.0_scaffold81G26138 Striga asiatica HOM05D001090 ORTHO05D002687 3.5e-07 60.5 33 87.9
CSS0001559 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
CSS0005695 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
CSS0008667 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
CSS0022044 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
Ciclev10000116m.g Citrus clementina HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
Nitab4.5_0001168g0030 Nicotiana tabacum HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
Peaxi162Scf01003g00003 Petunia axillaris HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
Solyc11g005020.3 Solanum lycopersicum HOM05D001090 ORTHO05D002687 4.6e-07 60.1 33 84.8
Actinidia15217 Actinidia chinensis HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 81.8
Aa31LG7G5620 Aethionema arabicum HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 84.8
ClCG07G007680 Citrullus lanatus HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 81.8
COL.COLO4_09042 Corchorus olitorius HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 81.8
MELO3C016326.2 Cucumis melo HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 81.8
CsaV3_4G006230 Cucumis sativus L. HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 81.8
ECA232G2805 Erigeron canadensis HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 84.8
QL09p032695 Quercus lobata HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 84.8
Sc10g0008070 Simmondsia chinensis HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 84.8
THA.LOC104812087 Tarenaya hassleriana HOM05D001090 ORTHO05D002687 6.0e-07 59.7 33 84.8
Aqoxy6G00322 Aquilegia oxysepala HOM05D001090 ORTHO05D002687 7.9e-07 59.3 32 87.5
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 7.9e-07 59.3 33 81.8
Lj1g0001372 Lotus japonicus HOM05D001090 ORTHO05D002687 7.9e-07 59.3 33 84.8
Medtr3g088555 Medicago truncatula HOM05D001090 ORTHO05D002687 7.9e-07 59.3 33 84.8
Psat5g085000 Pisum sativum HOM05D001090 ORTHO05D002687 7.9e-07 59.3 33 84.8
TPR.G13471 Trifolium pratense HOM05D001090 ORTHO05D002687 7.9e-07 59.3 33 84.8
EL10Ac1g01340 Beta vulgaris HOM05D001090 ORTHO05D002687 1.0e-06 58.9 33 81.8
AUR62007722 Chenopodium quinoa HOM05D001090 ORTHO05D002687 1.0e-06 58.9 33 81.8
Dinv14669 Davidia involucrata HOM05D001090 ORTHO05D002687 1.0e-06 58.9 33 81.8
Rhsim06G0091300 Rhododendron simsii HOM05D001090 ORTHO05D002687 1.0e-06 58.9 33 81.8
RcHm_v2.0_Chr6g0296621 Rosa chinensis HOM05D001090 ORTHO05D002687 1.0e-06 58.9 33 84.8
MSTRG.24175 Avicennia marina HOM05D001090 ORTHO05D002687 1.3e-06 58.5 33 81.8
Lsat_1_v5_gn_4_134081 Lactuca sativa HOM05D001090 ORTHO05D002687 1.3e-06 58.5 33 81.8
Nitab4.5_0002045g0110 Nicotiana tabacum HOM05D001090 ORTHO05D002687 1.3e-06 58.5 33 84.8
Sabra02G0061200 Salix brachista HOM05D001090 ORTHO05D002687 1.3e-06 58.5 33 84.8
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 81.8
A08p28880 Brassica napus HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 81.8
C08p20970 Brassica napus HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 81.8
BolC8t49734H Brassica oleracea HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 81.8
BraA08t34819Z Brassica rapa HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 81.8
Potri.002G078000 Populus trichocarpa HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 84.8
Sp1g19170 Schrenkiella parvula HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 81.8
Sed0013290 Sechium edule HOM05D001090 ORTHO05D002687 1.8e-06 58.2 33 78.8
arahy.Tifrunner.gnm1.ann1.9Y6HC5 Arachis hypogaea HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
arahy.Tifrunner.gnm1.ann1.V5YSST Arachis hypogaea HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 2.3e-06 57.8 32 84.4
FvH4_2g27750 Fragaria vesca HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
PSO832G0312 Papaver somniferum HOM05D001090 ORTHO05D002687 2.3e-06 57.8 33 81.8
ATR0584G059 Amborella trichopoda HOM05D001090 ORTHO05D002687 3.0e-06 57.4 33 78.8
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 3.0e-06 57.4 33 81.8
SalBow2G0524 Salvia bowleyana HOM05D001090 ORTHO05D002687 3.0e-06 57.4 33 81.8
Carub.0001s2107 Capsella rubella HOM05D001090 ORTHO05D002687 3.9e-06 57.0 32 84.4
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 3.9e-06 57.0 33 78.8
vmacro05517 Vaccinium macrocarpon HOM05D001090 ORTHO05D002687 3.9e-06 57.0 33 78.8
AUR62013420 Chenopodium quinoa HOM05D001090 ORTHO05D002687 5.1e-06 56.6 33 78.8
CiPaw.15G032300 Carya illinoinensis HOM05D001090 ORTHO05D002687 6.7e-06 56.2 31 83.9
PSO764G0256 Papaver somniferum HOM05D001090 ORTHO05D002687 6.7e-06 56.2 33 78.8


User provided reference genes

Program Settings