Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.3e-122 442.2 217 100.0
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 8.7e-53 211.1 167 66.5
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 4.9e-48 195.3 194 56.2
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 5.8e-41 171.8 214 47.7
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.3e-35 154.1 257 42.8
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 1.1e-34 151.0 229 43.2
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 4.6e-30 135.6 217 41.5
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 4.6e-30 135.6 237 39.7
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 7.9e-30 134.8 217 41.0
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.8e-29 133.7 234 38.9
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 3.0e-29 132.9 233 37.3
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 5.1e-29 132.1 231 39.0
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.1e-28 131.0 252 36.9
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 7.4e-28 128.3 116 57.8
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.7e-27 125.9 203 39.9
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.8e-27 125.6 198 38.4
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 8.2e-27 124.8 246 38.2
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.9e-26 121.7 239 36.8
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.5e-25 120.6 114 57.9
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.5e-25 120.6 165 42.4
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.5e-25 119.0 213 39.9
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.5e-25 119.0 203 37.9
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 5.9e-25 118.6 116 54.3
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 7.6e-25 118.2 117 53.8
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.6e-25 118.2 225 35.6
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.0e-24 117.9 222 38.3
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.2e-24 116.7 186 39.8
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 2.9e-24 116.3 191 40.8
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.9e-24 116.3 169 43.8
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 3.8e-24 115.9 139 46.8
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 6.5e-24 115.2 120 52.5
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 6.5e-24 115.2 191 40.3
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 8.5e-24 114.8 199 38.7
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.9e-23 113.6 191 40.3
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.5e-23 113.2 115 50.4
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 3.2e-23 112.8 119 50.4
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 3.2e-23 112.8 134 47.8
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 4.2e-23 112.5 183 41.5
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 4.2e-23 112.5 183 41.5
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 4.2e-23 112.5 183 39.9
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.5e-23 112.1 124 48.4
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 9.3e-23 111.3 104 54.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 9.3e-23 111.3 193 40.9
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 9.3e-23 111.3 124 48.4
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.3e-23 111.3 124 48.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 9.3e-23 111.3 174 40.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.2e-22 110.9 186 39.2
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.2e-22 110.9 193 36.8
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.6e-22 110.5 111 49.5
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 2.1e-22 110.2 199 40.2
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.7e-22 109.8 114 50.0
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 3.6e-22 109.4 114 50.0
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 3.6e-22 109.4 180 40.6
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 3.6e-22 109.4 123 49.6
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 4.6e-22 109.0 142 42.3
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 6.1e-22 108.6 104 55.8
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.1e-22 108.6 223 35.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 6.1e-22 108.6 123 50.4
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.8e-21 107.1 179 38.0
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.8e-21 107.1 125 47.2
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.8e-21 107.1 175 38.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.3e-21 106.7 126 46.8
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.3e-21 106.7 126 46.8
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.3e-21 106.7 63 76.2
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 5.1e-21 105.5 157 40.8
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.1e-20 104.4 189 37.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-20 104.0 63 73.0
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.5e-20 104.0 217 35.0
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.3e-20 102.8 181 38.1
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 3.3e-20 102.8 109 47.7
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 4.3e-20 102.4 69 66.7
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.7e-20 102.1 99 56.6
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.7e-20 102.1 99 56.6
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 5.7e-20 102.1 66 69.7
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 5.7e-20 102.1 193 35.8
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 9.7e-20 101.3 64 73.4
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 9.7e-20 101.3 141 41.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.7e-20 101.3 110 51.8
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 9.7e-20 101.3 65 70.8
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 9.7e-20 101.3 65 70.8
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-19 100.5 152 39.5
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.2e-19 100.1 58 75.9
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 2.2e-19 100.1 107 46.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.8e-19 99.0 152 38.8
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 8.2e-19 98.2 159 40.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.2e-19 98.2 122 44.3
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.4e-18 96.7 88 55.7
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 3.1e-18 96.3 150 40.0
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 4.1e-18 95.9 174 37.4
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 9.1e-18 94.7 74 55.4
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 9.1e-18 94.7 139 43.9
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.4e-17 92.8 160 38.8
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.2e-16 90.1 74 55.4
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 3.8e-16 89.4 98 50.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 6.5e-16 88.6 96 49.0
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.4e-15 87.4 77 54.5
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.9e-15 87.0 170 37.1
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.5e-15 86.7 104 50.0
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.2e-15 85.9 105 44.8
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.2e-15 85.9 112 45.5
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 5.5e-15 85.5 129 44.2
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 7.2e-15 85.1 65 60.0
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.4e-15 84.7 105 44.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 9.4e-15 84.7 70 55.7
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.6e-14 84.0 105 43.8
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.6e-14 84.0 146 38.4
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.6e-14 84.0 80 53.8
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 2.1e-14 83.6 82 52.4
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 2.7e-14 83.2 108 45.4
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.7e-14 83.2 70 55.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.6e-14 82.4 86 47.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.6e-14 82.4 86 47.7
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.6e-14 82.4 83 49.4
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.6e-14 82.4 69 52.2
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.1e-14 82.0 146 36.3
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.4e-13 80.9 69 50.7
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.1e-13 79.0 136 39.7
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 5.1e-13 79.0 178 37.1
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 1.1e-12 77.8 129 40.3
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 5.7e-12 75.5 86 45.3
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 5.7e-12 75.5 86 45.3
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 5.7e-12 75.5 148 37.2
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.3e-11 74.3 66 56.1
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-11 74.3 87 43.7
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.8e-11 73.2 112 39.3
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 4.8e-11 72.4 117 38.5
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 8.2e-11 71.6 50 62.0
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.1e-10 71.2 86 44.2
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.1e-10 71.2 103 39.8
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.4e-10 70.9 48 66.7
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.4e-10 70.9 52 63.5
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 4.1e-10 69.3 125 36.8
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 5.3e-10 68.9 104 40.4
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 1.2e-09 67.8 64 54.7
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 5.9e-09 65.5 86 44.2
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 7.7e-09 65.1 145 33.1
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.3e-08 64.3 59 47.5
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 2.2e-08 63.5 62 50.0
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.9e-08 63.2 120 37.5
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 8.5e-08 61.6 133 30.8
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 8.5e-08 61.6 133 30.8
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 1.1e-07 61.2 157 31.2
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 4.2e-07 59.3 42 61.9
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 5.5e-07 58.9 82 43.9
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 9.4e-07 58.2 86 39.5
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 1.6e-06 57.4 50 52.0
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 2.1e-06 57.0 149 32.9
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.1e-06 57.0 83 39.8
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 2.7e-06 56.6 105 33.3
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 7.9e-06 55.1 67 44.8


User provided reference genes

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