Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 1.2e-39 166.0 84 100.0
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 5.6e-32 140.6 84 84.5
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 7.5e-29 130.2 81 80.2
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 3.2e-27 124.8 82 76.8
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 1.2e-23 112.8 82 68.3
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 3.1e-22 108.2 78 69.2
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 4.0e-22 107.8 75 73.3
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 5.8e-21 104.0 75 66.7
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 9.9e-21 103.2 78 67.9
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 1.7e-20 102.4 78 64.1
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 2.2e-20 102.1 77 66.2
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 2.2e-20 102.1 82 65.9
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 2.9e-20 101.7 78 67.9
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 3.7e-20 101.3 78 64.1
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 3.7e-20 101.3 79 67.1
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 4.9e-20 100.9 80 65.0
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 6.4e-20 100.5 80 65.0
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 8.3e-20 100.1 51 92.2
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 1.1e-19 99.8 79 65.8
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 3.2e-19 98.2 74 63.5
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 4.1e-19 97.8 80 60.0
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 5.4e-19 97.4 78 65.4
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 5.4e-19 97.4 79 64.6
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 5.4e-19 97.4 79 64.6
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 5.4e-19 97.4 85 60.0
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 9.2e-19 96.7 81 60.5
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 1.2e-18 96.3 72 66.7
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 3.5e-18 94.7 73 61.6
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 3.5e-18 94.7 74 67.6
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 6.0e-18 94.0 79 59.5
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 6.0e-18 94.0 79 60.8
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 7.8e-18 93.6 69 68.1
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 1.0e-17 93.2 76 64.5
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 1.3e-17 92.8 78 60.3
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 1.7e-17 92.4 75 61.3
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 1.7e-17 92.4 77 59.7
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 2.3e-17 92.0 79 63.3
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 3.0e-17 91.7 80 57.5
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 3.9e-17 91.3 73 61.6
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 8.6e-17 90.1 86 59.3
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 1.1e-16 89.7 76 59.2
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 4.3e-16 87.8 77 55.8
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 4.3e-16 87.8 73 61.6
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 1.2e-15 86.3 68 64.7
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 1.6e-15 85.9 80 57.5
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 2.1e-15 85.5 66 68.2
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 2.8e-15 85.1 77 53.2
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 6.2e-15 84.0 80 55.0
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 1.4e-14 82.8 76 59.2
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 1.4e-14 82.8 71 63.4
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 6.8e-14 80.5 74 60.8
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 1.5e-13 79.3 81 58.0
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 1.5e-13 79.3 77 55.8
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 2.0e-13 79.0 76 56.6
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 2.0e-13 79.0 65 56.9
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 2.0e-13 79.0 65 56.9
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 2.0e-13 79.0 78 55.1
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 2.6e-13 78.6 72 56.9
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 2.6e-13 78.6 80 56.2
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 2.9e-12 75.1 71 59.2
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 6.4e-12 73.9 71 57.7
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 8.4e-12 73.6 71 57.7
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 4.1e-11 71.2 52 63.5
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 5.4e-11 70.9 79 54.4
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 1.2e-10 69.7 53 67.9
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 1.0e-09 66.6 69 53.6
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 1.0e-09 66.6 69 53.6
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 1.7e-09 65.9 65 56.9
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 2.3e-09 65.5 62 61.3
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 8.7e-09 63.5 65 49.2
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 9.6e-08 60.1 44 61.4
SEGI_19848 Sequoiadendron giganteum HOM05D008117 ORTHO05D010265 6.9e-06 53.9 70 44.3


User provided reference genes

Program Settings