Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G168400 Phaseolus vulgaris HOM05D007182 ORTHO05D008919 2.0e-115 419.1 208 100.0
Glyma.13G084500 Glycine max HOM05D007182 ORTHO05D008919 5.9e-91 337.8 210 83.3
Glyma.14G166200 Glycine max HOM05D007182 ORTHO05D008919 3.0e-87 325.5 208 78.8
VMungo0647G1564 Vigna mungo HOM05D007182 ORTHO05D008919 1.4e-79 300.1 211 77.7
Lalb_Chr10g0102011 Lupinus albus HOM05D007182 ORTHO05D008919 5.9e-59 231.5 213 61.5
TPR.G30417 Trifolium pratense HOM05D007182 ORTHO05D008919 6.4e-53 211.5 214 60.3
Lj1g0021904 Lotus japonicus HOM05D007182 ORTHO05D008919 3.2e-52 209.1 276 51.8
CiPaw.06G024500 Carya illinoinensis HOM05D007182 ORTHO05D008919 2.6e-46 189.5 218 50.9
Lj1g0017374 Lotus japonicus HOM05D007182 ORTHO05D008919 4.9e-45 185.3 213 54.0
CiPaw.05G229300 Carya illinoinensis HOM05D007182 ORTHO05D008919 7.0e-44 181.4 213 54.9
Psat5g134040 Pisum sativum HOM05D007182 ORTHO05D008919 2.7e-43 179.5 198 57.1
Manes.02G158600 Manihot esculenta HOM05D007182 ORTHO05D008919 3.5e-43 179.1 202 52.5
Potri.002G089650 Populus trichocarpa HOM05D007182 ORTHO05D008919 6.0e-43 178.3 202 53.0
Glyma.04G253900 Glycine max HOM05D007182 ORTHO05D008919 8.6e-42 174.5 212 53.3
Duzib041G0557 Durio zibethinus HOM05D007182 ORTHO05D008919 1.1e-41 174.1 201 50.2
Medtr3g073330 Medicago truncatula HOM05D007182 ORTHO05D008919 1.9e-41 173.3 206 55.3
Medtr5g060450 Medicago truncatula HOM05D007182 ORTHO05D008919 2.5e-41 172.9 173 59.0
Duzib093G0280 Durio zibethinus HOM05D007182 ORTHO05D008919 3.3e-41 172.6 205 51.2
Duzib116G0693 Durio zibethinus HOM05D007182 ORTHO05D008919 3.3e-41 172.6 197 51.3
Lalb_Chr08g0241731 Lupinus albus HOM05D007182 ORTHO05D008919 5.6e-41 171.8 230 52.2
Glyma.06G108400 Glycine max HOM05D007182 ORTHO05D008919 3.1e-39 166.0 215 50.2
Lalb_Chr11g0065671 Lupinus albus HOM05D007182 ORTHO05D008919 5.2e-39 165.2 220 48.6
Sabra05G0129100 Salix brachista HOM05D007182 ORTHO05D008919 5.2e-39 165.2 193 49.2
Thecc.08G116300 Theobroma cacao HOM05D007182 ORTHO05D008919 6.8e-39 164.9 203 48.8
RcHm_v2.0_Chr7g0240831 Rosa chinensis HOM05D007182 ORTHO05D008919 7.5e-38 161.4 194 51.0
Potri.005G171600 Populus trichocarpa HOM05D007182 ORTHO05D008919 9.9e-38 161.0 186 51.1
Manes.18G072600 Manihot esculenta HOM05D007182 ORTHO05D008919 1.7e-37 160.2 202 51.0
Phvul.009G025900 Phaseolus vulgaris HOM05D007182 ORTHO05D008919 2.2e-37 159.8 217 49.8
TPR.G32946 Trifolium pratense HOM05D007182 ORTHO05D008919 3.7e-37 159.1 206 51.0
VMungo1309G0514 Vigna mungo HOM05D007182 ORTHO05D008919 1.4e-36 157.1 183 53.0
COL.COLO4_21819 Corchorus olitorius HOM05D007182 ORTHO05D008919 1.9e-36 156.8 204 48.0
FAN13G2785 Fragaria x ananassa HOM05D007182 ORTHO05D008919 4.6e-35 152.1 196 50.0
TWI36G1401 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 1.0e-34 151.0 208 48.1
MELO3C022789.2 Cucumis melo HOM05D007182 ORTHO05D008919 1.3e-34 150.6 215 44.2
Sabra02G0070600 Salix brachista HOM05D007182 ORTHO05D008919 1.7e-34 150.2 170 52.9
Atru.chr13.1314 Acer truncatum HOM05D007182 ORTHO05D008919 3.9e-34 149.1 211 48.3
Atru.chr13.1358 Acer truncatum HOM05D007182 ORTHO05D008919 3.9e-34 149.1 211 48.3
ClCG03G009070 Citrullus lanatus HOM05D007182 ORTHO05D008919 5.1e-34 148.7 214 43.5
FAN08G1433 Fragaria x ananassa HOM05D007182 ORTHO05D008919 6.6e-34 148.3 193 49.2
Eucgr.F03740 Eucalyptus grandis HOM05D007182 ORTHO05D008919 1.9e-33 146.7 200 46.5
Gorai.010G046800 Gossypium raimondii HOM05D007182 ORTHO05D008919 2.5e-33 146.4 205 47.3
FvH4_5g38830 Fragaria vesca HOM05D007182 ORTHO05D008919 4.3e-33 145.6 193 49.2
FAN18G1758 Fragaria x ananassa HOM05D007182 ORTHO05D008919 4.3e-33 145.6 193 49.2
Gohir.D06G041600 Gossypium hirsutum HOM05D007182 ORTHO05D008919 4.3e-33 145.6 205 47.3
Gohir.A06G040600 Gossypium hirsutum HOM05D007182 ORTHO05D008919 2.1e-32 143.3 203 47.8
FAN04G2762 Fragaria x ananassa HOM05D007182 ORTHO05D008919 3.1e-31 139.4 193 48.7
FAN04G3126 Fragaria x ananassa HOM05D007182 ORTHO05D008919 8.9e-31 137.9 199 46.7
Gorai.009G242300 Gossypium raimondii HOM05D007182 ORTHO05D008919 1.2e-30 137.5 208 46.2
Gohir.D05G234100 Gossypium hirsutum HOM05D007182 ORTHO05D008919 2.6e-30 136.3 208 46.6
Hma1.2p1_0221F.1_g093130 Hydrangea macrophylla HOM05D007182 ORTHO05D008919 2.6e-30 136.3 199 44.2
Ciclev10002385m.g Citrus clementina HOM05D007182 ORTHO05D008919 5.8e-30 135.2 231 41.6
Sed0021526 Sechium edule HOM05D007182 ORTHO05D008919 2.2e-29 133.3 225 40.4
TWI56G1442 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 2.2e-29 133.3 190 48.9
TWI12G0744 Tripterygium wilfordii HOM05D007182 ORTHO05D008919 3.2e-28 129.4 208 43.3
Gohir.A05G231800 Gossypium hirsutum HOM05D007182 ORTHO05D008919 4.2e-28 129.0 208 45.2
CsaV3_5G023550 Cucumis sativus L. HOM05D007182 ORTHO05D008919 1.6e-27 127.1 183 47.0
Dinv26722 Davidia involucrata HOM05D007182 ORTHO05D008919 2.1e-27 126.7 164 47.0
Thhalv10004990m.g Eutrema salsugineum HOM05D007182 ORTHO05D008919 7.8e-27 124.8 195 45.1
AT1G36940 Arabidopsis thaliana HOM05D007182 ORTHO05D008919 8.7e-26 121.3 178 42.7
Cc00_g10670 Coffea canephora HOM05D007182 ORTHO05D008919 4.3e-25 119.0 206 39.8
AL1G51080 Arabidopsis lyrata HOM05D007182 ORTHO05D008919 5.6e-25 118.6 179 44.1
Rhsim06G0109300 Rhododendron simsii HOM05D007182 ORTHO05D008919 7.3e-25 118.2 180 43.3
Prupe.1G506300 Prunus persica HOM05D007182 ORTHO05D008919 2.1e-24 116.7 224 41.1
PGR042G1174 Punica granatum HOM05D007182 ORTHO05D008919 2.8e-24 116.3 215 39.1
THA.LOC104806807 Tarenaya hassleriana HOM05D007182 ORTHO05D008919 1.8e-23 113.6 195 44.1
THA.LOC104813133 Tarenaya hassleriana HOM05D007182 ORTHO05D008919 9.0e-23 111.3 191 41.4
Carub.0001s3387 Capsella rubella HOM05D007182 ORTHO05D008919 2.0e-22 110.2 177 42.9
DCAR_023125 Daucus carota HOM05D007182 ORTHO05D008919 2.6e-22 109.8 184 39.1
A05p23400 Brassica napus HOM05D007182 ORTHO05D008919 3.4e-22 109.4 193 42.0
BraA05t21203Z Brassica rapa HOM05D007182 ORTHO05D008919 3.4e-22 109.4 193 42.0
Migut.N03323 Erythranthe guttata HOM05D007182 ORTHO05D008919 3.4e-22 109.4 192 39.1
BcaB03g13641 Brassica carinata HOM05D007182 ORTHO05D008919 9.9e-22 107.8 185 42.2
Sc23g0000930 Simmondsia chinensis HOM05D007182 ORTHO05D008919 2.2e-21 106.7 210 36.7
CARHR034810 Cardamine hirsuta HOM05D007182 ORTHO05D008919 2.9e-21 106.3 195 40.5
Sopen11g008530 Solanum pennellii HOM05D007182 ORTHO05D008919 1.1e-20 104.4 207 39.1
Peaxi162Scf00476g00051 Petunia axillaris HOM05D007182 ORTHO05D008919 4.2e-20 102.4 194 39.2
Nn1g08539 Nelumbo nucifera HOM05D007182 ORTHO05D008919 9.3e-20 101.3 194 37.6
Solyc11g013500.1 Solanum lycopersicum HOM05D007182 ORTHO05D008919 9.3e-20 101.3 207 38.2
PGSC0003DMG400027800 Solanum tuberosum HOM05D007182 ORTHO05D008919 2.1e-19 100.1 214 39.3
Dinv27387 Davidia involucrata HOM05D007182 ORTHO05D008919 2.7e-19 99.8 222 36.0
Oeu017862.1 Olea europaea HOM05D007182 ORTHO05D008919 3.5e-19 99.4 196 35.7
Aa31LG6G9060 Aethionema arabicum HOM05D007182 ORTHO05D008919 1.0e-18 97.8 192 39.1
TAR197G0002 Trochodendron aralioides HOM05D007182 ORTHO05D008919 1.7e-18 97.1 195 37.4
EL10Ac1g00042 Beta vulgaris HOM05D007182 ORTHO05D008919 3.9e-18 95.9 237 31.2
Nitab4.5_0009801g0010 Nicotiana tabacum HOM05D007182 ORTHO05D008919 6.6e-18 95.1 168 39.9
TAR628G0731 Trochodendron aralioides HOM05D007182 ORTHO05D008919 1.5e-17 94.0 185 37.8
Oeu043797.1 Olea europaea HOM05D000316 ORTHO05D008919 1.9e-17 93.6 178 38.2
Oeu043798.1 Olea europaea HOM05D000316 ORTHO05D008919 1.9e-17 93.6 178 38.2
Sp1g31070 Schrenkiella parvula HOM05D007182 ORTHO05D008919 2.5e-17 93.2 202 37.1
TAR127G0001 Trochodendron aralioides HOM05D007182 ORTHO05D008919 2.5e-17 93.2 187 38.5
Nn5g27955 Nelumbo nucifera HOM05D007182 ORTHO05D008919 1.3e-16 90.9 198 36.9
SGA_v2.0_scaffold28G12033 Striga asiatica HOM05D007182 ORTHO05D008919 1.8e-15 87.0 191 33.5
DCAR_014791 Daucus carota HOM05D007182 ORTHO05D008919 3.8e-13 79.3 191 35.6
SGA_v2.0_scaffold118G32440 Striga asiatica HOM05D007182 ORTHO05D008919 1.1e-12 77.8 194 33.5
Lsat_1_v5_gn_4_133360 Lactuca sativa HOM05D007182 ORTHO05D008919 9.3e-12 74.7 203 35.5
Ah.05g172700 Amaranthus hybridus HOM05D007182 ORTHO05D008919 8.7e-10 68.2 219 29.7
Nitab4.5_0000051g0140 Nicotiana tabacum HOM05D007182 ORTHO05D008919 2.8e-08 63.2 127 38.6
MBI06_g01043_MAGBIO Magnolia biondii HOM05D007182 ORTHO05D008919 3.1e-07 59.7 192 33.9
MSTRG.1489 Avicennia marina HOM05D007182 ORTHO05D008919 4.0e-07 59.3 167 33.5
Cpa.g.sc828.3 Carica papaya HOM05D007182 ORTHO05D008919 9.0e-07 58.2 47 57.4
AUR62004689 Chenopodium quinoa HOM05D007182 ORTHO05D008919 9.0e-07 58.2 153 34.6
MBI03_g11135_MAGBIO Magnolia biondii HOM05D007182 ORTHO05D008919 2.6e-06 56.6 147 33.3
DCAR_014280 Daucus carota HOM05D007182 ORTHO05D008919 3.4e-06 56.2 173 33.5
SalBow7G0102 Salvia bowleyana HOM05D007182 ORTHO05D008919 4.5e-06 55.8 185 29.7
SalBow7G3005 Salvia bowleyana HOM05D007182 ORTHO05D008919 4.5e-06 55.8 185 29.7
SGA_v2.0_scaffold24G10509 Striga asiatica HOM05D007182 ORTHO05D008919 5.8e-06 55.5 188 32.4


User provided reference genes

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