Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 3.2e-245 851.3 419 100.0
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 5.3e-216 754.2 426 87.3
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 5.9e-183 644.4 369 84.6
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 8.0e-172 607.4 430 70.7
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 1.5e-165 586.6 430 67.9
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 1.4e-163 580.1 428 69.4
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 3.1e-163 578.9 430 67.7
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 6.8e-163 577.8 430 67.0
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 2.1e-148 529.6 433 62.1
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 8.9e-147 524.2 433 61.4
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 1.4e-144 516.9 395 67.3
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 4.8e-132 475.3 342 68.1
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 3.3e-125 452.6 437 53.5
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 1.5e-117 427.2 432 53.7
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 2.5e-117 426.4 426 53.5
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 2.1e-116 423.3 435 51.3
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 4.8e-116 422.2 432 50.5
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 9.0e-115 417.9 433 51.3
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 2.6e-114 416.4 387 54.0
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.8e-110 403.7 432 49.8
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 6.7e-110 401.7 429 48.5
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 4.3e-109 399.1 435 48.7
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 2.4e-107 393.3 435 49.7
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 4.1e-107 392.5 433 49.2
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 1.2e-106 391.0 447 48.8
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 1.7e-105 387.1 438 48.6
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 6.5e-105 385.2 431 49.0
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 8.5e-105 384.8 430 48.8
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 1.1e-104 384.4 427 48.0
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 1.1e-104 384.4 443 47.9
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 1.4e-104 384.0 428 49.5
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 1.2e-103 380.9 430 49.1
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 1.5e-101 374.0 432 47.5
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 1.9e-101 373.6 429 48.5
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 2.5e-101 373.2 466 45.3
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 1.3e-100 370.9 427 47.1
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 1.4e-99 367.5 436 47.9
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 1.4e-99 367.5 444 45.5
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 2.2e-97 360.1 396 48.7
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 5.3e-91 339.0 381 46.7
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 2.0e-90 337.0 428 43.5
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 5.9e-90 335.5 429 43.1
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 2.2e-89 333.6 426 42.5
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 2.9e-89 333.2 434 42.4
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 6.5e-89 332.0 435 42.8
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 1.9e-88 330.5 430 43.3
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 7.2e-88 328.6 434 42.6
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.6e-87 327.4 430 41.2
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 3.6e-87 326.2 362 49.2
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 8.8e-86 321.6 432 41.4
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 1.5e-85 320.9 449 39.4
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.3e-84 317.8 382 43.7
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 1.3e-84 317.8 430 42.1
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.4e-83 314.3 502 36.3
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 1.8e-83 313.9 431 40.8
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 2.4e-83 313.5 364 45.9
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 1.0e-81 308.1 431 42.2
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 4.2e-80 302.8 377 43.5
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 8.8e-78 295.0 397 41.8
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 2.2e-73 280.4 431 38.7
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.0e-70 270.0 435 38.9
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 9.8e-69 265.0 312 47.8
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 1.7e-68 264.2 426 38.5
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 2.6e-61 240.4 433 35.8
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 2.6e-61 240.4 456 35.7
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 3.4e-61 240.0 464 34.7
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 5.0e-57 226.1 261 46.7
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 4.9e-52 209.5 248 43.1
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 4.1e-51 206.5 326 36.8
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 7.0e-51 205.7 259 40.5
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 5.6e-48 196.1 216 48.6
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 2.3e-46 190.7 211 47.4
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.5e-42 176.8 196 49.0
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 4.1e-35 153.3 165 46.1
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 8.6e-33 145.6 330 30.3
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 1.7e-25 121.3 257 31.5
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 3.3e-24 117.1 160 43.8
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 3.5e-18 97.1 85 54.1
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.0e-17 94.0 149 36.2
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 4.8e-15 86.7 182 30.2
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 1.3e-12 78.6 76 52.6
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 8.4e-12 75.9 80 46.2
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 6.2e-07 59.7 47 55.3


User provided reference genes

Program Settings