Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 7.4e-72 273.9 147 100.0
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 2.6e-69 265.4 147 96.6
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 3.4e-69 265.0 147 95.9
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 5.8e-69 264.2 145 96.6
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.0e-68 263.5 147 95.9
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 1.0e-65 253.4 146 91.8
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 8.7e-65 250.4 146 90.4
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 7.4e-64 247.3 146 89.0
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 9.7e-64 246.9 140 92.9
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 6.3e-63 244.2 146 87.7
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-61 240.0 146 87.0
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-61 240.0 146 87.0
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 2.0e-61 239.2 140 90.0
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 7.6e-61 237.3 146 86.3
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 6.5e-60 234.2 147 82.3
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 6.5e-60 234.2 144 84.7
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.1e-59 233.4 147 83.0
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.1e-59 233.4 147 83.0
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.1e-59 233.4 147 83.0
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.4e-59 233.0 142 86.6
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 145 83.4
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 146 83.6
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 2.5e-59 232.3 148 82.4
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 2.5e-59 232.3 148 82.4
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 3.2e-59 231.9 142 85.2
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 3.2e-59 231.9 139 86.3
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.2e-59 231.5 139 86.3
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.5e-59 231.1 146 84.9
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 5.5e-59 231.1 148 84.5
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 5.5e-59 231.1 144 84.0
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 9.4e-59 230.3 146 84.2
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.2e-58 229.9 147 83.0
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.7e-58 228.8 139 86.3
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 2.7e-58 228.8 140 84.3
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.7e-58 228.8 145 82.1
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 2.7e-58 228.8 145 82.1
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 3.6e-58 228.4 140 86.4
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 4.6e-58 228.0 147 82.3
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 4.6e-58 228.0 141 84.4
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 79.7
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.0e-57 226.9 141 85.1
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.0e-57 226.9 147 78.9
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.0e-57 226.9 149 81.9
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.4e-57 226.5 142 83.8
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.4e-57 226.5 144 81.2
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.8e-57 226.1 139 84.9
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.8e-57 226.1 139 85.6
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.8e-57 226.1 139 84.2
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.3e-57 225.7 144 81.9
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 3.0e-57 225.3 145 80.7
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 3.0e-57 225.3 141 83.7
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.1e-57 224.6 140 82.9
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 5.1e-57 224.6 148 79.7
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 6.7e-57 224.2 140 82.1
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 6.7e-57 224.2 139 82.7
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 8.8e-57 223.8 140 82.1
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 8.8e-57 223.8 140 82.1
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.1e-56 223.4 139 84.9
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.1e-56 223.4 144 81.9
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.1e-56 223.4 143 80.4
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.1e-56 223.4 140 82.9
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.5e-56 223.0 145 82.1
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.9e-56 222.6 144 82.6
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.5e-56 222.2 147 81.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.3e-56 221.9 140 81.4
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 4.3e-56 221.5 140 80.7
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 7.4e-56 220.7 140 82.1
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.4e-56 220.7 140 82.1
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 7.4e-56 220.7 139 82.0
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 9.7e-56 220.3 139 80.6
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.3e-55 219.9 137 83.9
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.7e-55 219.5 136 82.4
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.2e-55 219.2 146 80.8
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.2e-55 219.2 148 77.7
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.8e-55 218.8 140 80.7
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.8e-55 218.8 140 80.7
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 139 82.0
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.8e-55 218.8 139 81.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.8e-55 218.8 139 81.3
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 134 83.6
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.8e-55 218.8 140 80.7
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 4.8e-55 218.0 140 80.7
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 6.3e-55 217.6 144 78.5
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 8.2e-55 217.2 139 82.0
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 8.2e-55 217.2 137 78.8
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.1e-54 216.9 139 82.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.1e-54 216.9 143 79.0
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.8e-54 216.1 139 82.0
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.4e-54 215.7 139 79.9
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 2.4e-54 215.7 139 79.9
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.1e-54 214.9 143 79.0
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 5.3e-54 214.5 141 78.7
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 6.9e-54 214.2 141 78.7
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 9.1e-54 213.8 141 78.7
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 3.4e-53 211.8 137 81.0
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 4.5e-53 211.5 135 80.7
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.2e-52 209.1 137 78.1
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 2.9e-52 208.8 135 79.3
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.9e-52 208.8 135 79.3
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 5.0e-52 208.0 136 78.7
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 6.5e-52 207.6 144 76.4
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 8.5e-52 207.2 143 76.9
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.1e-50 202.6 144 74.3
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 3.9e-49 198.4 142 76.1
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 3.9e-49 198.4 125 84.8
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 5.1e-49 198.0 140 73.6
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.4e-48 194.9 140 72.9
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 7.4e-48 194.1 149 71.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 7.4e-48 194.1 140 72.9
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 7.4e-48 194.1 142 72.5
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 7.4e-48 194.1 135 73.3
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 2.2e-47 192.6 140 72.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 3.7e-47 191.8 142 73.9
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 4.8e-47 191.4 143 73.4
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.1e-46 190.3 136 72.8
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.4e-46 189.9 145 66.2
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 72.7
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 72.7
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.4e-46 189.9 139 72.7
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-46 189.5 138 70.3
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 3.1e-46 188.7 142 71.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 7.0e-46 187.6 139 70.5
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 9.1e-46 187.2 134 72.4
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.0e-44 183.7 142 71.8
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 2.9e-44 182.2 142 71.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 6.5e-44 181.0 116 79.3
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.4e-43 179.9 147 69.4
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.4e-43 179.9 147 69.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 9.4e-43 177.2 118 80.5
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.2e-42 176.8 135 68.9
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.7e-42 174.9 147 61.9
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 6.7e-41 171.0 142 62.7
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.5e-40 169.9 142 66.2
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 4.1e-38 161.8 144 61.8
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.2e-34 150.2 142 55.6
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.2e-34 150.2 132 62.1
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.0e-32 142.9 130 60.8
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.6e-32 142.5 130 56.2
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.8e-28 128.6 140 54.3
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.5e-24 116.7 109 61.5
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 6.3e-23 111.3 104 60.6
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.1e-22 110.5 80 73.8
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 5.0e-20 101.7 131 42.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.5e-19 99.4 138 39.9
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 2.4e-14 82.8 49 79.6
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 2.0e-13 79.7 87 48.3


User provided reference genes

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