Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 0.0e+00 1097.0 547 100.0
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.2e-292 1009.2 548 91.4
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 2.3e-288 995.0 535 92.1
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 7.3e-282 973.4 512 95.1
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.4e-280 969.1 535 90.1
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 4.7e-273 944.1 550 86.4
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 4.7e-273 944.1 550 86.5
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 4.0e-272 941.0 549 85.1
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 4.1e-269 931.0 550 85.3
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 4.3e-266 921.0 549 84.2
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 9.5e-266 919.8 540 85.7
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 3.5e-260 901.4 551 82.8
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.7e-259 899.0 551 82.9
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.4e-256 889.4 550 82.7
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 2.0e-255 885.6 551 81.5
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 4.9e-254 880.9 546 82.8
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 7.1e-253 877.1 550 81.6
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 3.0e-251 871.7 549 78.0
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 5.1e-251 870.9 552 81.5
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 3.6e-249 864.8 536 80.0
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 6.4e-246 854.0 551 78.2
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 8.4e-246 853.6 552 78.1
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 8.4e-246 853.6 551 79.9
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 3.5e-244 848.2 549 78.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 3.9e-243 844.7 547 78.1
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.1e-243 844.3 590 74.9
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.6e-241 839.3 514 80.2
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 1.1e-240 836.6 556 76.1
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.1e-240 836.6 553 76.3
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.4e-240 836.3 549 76.9
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 3.4e-239 831.6 556 76.1
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 3.4e-239 831.6 553 75.9
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.4e-239 831.6 549 77.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 4.5e-239 831.2 556 75.7
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 7.6e-239 830.5 513 80.9
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 6.4e-238 827.4 562 75.1
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 6.4e-238 827.4 562 74.9
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 8.4e-238 827.0 547 79.2
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.2e-236 823.2 511 79.6
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 2.1e-236 822.4 553 75.6
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 2.7e-236 822.0 550 75.6
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 1.8e-235 819.3 511 79.3
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.3e-235 818.9 511 79.5
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.9e-235 818.1 511 79.3
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.9e-234 815.8 511 79.1
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 9.6e-234 813.5 556 74.3
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.8e-233 812.0 516 78.5
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.8e-232 809.3 488 80.5
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 3.1e-232 808.5 555 75.1
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 3.1e-232 808.5 543 75.9
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 5.3e-232 807.7 546 75.6
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 5.3e-232 807.7 546 75.6
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 6.9e-232 807.4 540 75.4
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 9.0e-232 807.0 536 75.7
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.5e-231 806.2 561 72.5
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 2.0e-231 805.8 549 74.0
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 2.2e-230 802.4 553 74.3
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 2.9e-230 802.0 557 73.6
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.8e-230 801.6 557 73.6
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 8.4e-230 800.4 556 74.5
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 5.5e-229 797.7 524 75.8
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 9.3e-229 797.0 558 73.5
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 9.3e-229 797.0 488 78.9
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.1e-228 795.8 561 72.2
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 4.6e-228 794.7 535 75.0
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.1e-226 790.0 516 76.4
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 3.1e-224 781.9 531 74.6
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 5.3e-224 781.2 516 76.2
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 6.9e-224 780.8 546 73.1
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 2.0e-223 779.2 560 69.6
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 7.6e-223 777.3 506 75.7
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 1.7e-222 776.2 530 73.0
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 2.5e-221 772.3 564 69.7
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.6e-220 768.1 564 72.3
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 6.1e-220 767.7 549 71.6
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 2.3e-219 765.8 560 68.2
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 3.3e-218 761.9 513 75.2
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 9.7e-218 760.4 524 72.5
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 2.2e-217 759.2 548 70.1
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 6.3e-217 757.7 513 75.0
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 6.3e-217 757.7 523 72.1
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 8.2e-217 757.3 524 72.1
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.8e-216 756.1 544 71.3
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 4.1e-216 755.0 524 72.3
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.0e-214 750.4 549 70.5
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 1.7e-214 749.6 543 71.5
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 1.7e-214 749.6 548 69.7
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 5.0e-214 748.0 519 72.6
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 5.0e-214 748.0 544 70.2
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 7.2e-213 744.2 516 74.2
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 2.1e-212 742.7 543 70.5
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 2.7e-212 742.3 470 75.1
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.6e-212 741.9 559 66.7
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 1.4e-211 740.0 549 70.1
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.5e-210 736.5 543 69.2
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 4.3e-210 734.9 559 66.4
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 7.4e-210 734.2 550 68.9
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.8e-209 732.3 523 70.0
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 6.3e-209 731.1 550 68.5
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 1.1e-208 730.3 550 68.5
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.1e-208 730.3 546 67.8
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.1e-208 730.3 640 61.2
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.1e-208 730.3 561 66.0
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.4e-208 729.9 546 67.9
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 3.1e-208 728.8 548 67.9
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.0e-207 726.1 533 68.9
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.9e-205 719.5 548 68.2
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.5e-205 719.2 513 73.1
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 3.2e-205 718.8 535 68.6
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 7.9e-204 714.1 489 71.8
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.0e-203 713.8 538 69.1
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 3.9e-203 711.8 543 68.0
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 5.1e-203 711.4 571 64.1
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 6.7e-203 711.1 463 74.5
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.4e-200 702.6 544 68.0
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.1e-194 683.7 404 80.9
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 9.7e-194 680.6 545 66.8
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.0e-190 668.3 550 66.5
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 4.2e-189 665.2 506 68.0
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 6.8e-187 657.9 525 63.8
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 3.7e-185 652.1 554 64.3
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.2e-182 642.9 402 76.1
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 3.8e-182 642.1 554 60.1
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 3.0e-179 632.5 557 60.9
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 2.0e-170 603.2 428 75.7
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 5.7e-170 601.7 473 64.5
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.0e-166 590.9 529 58.4
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.6e-162 576.2 354 82.8
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.0e-159 566.6 501 59.7
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.5e-157 560.5 550 54.9
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 7.3e-157 558.1 548 55.3
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 3.4e-154 549.3 434 66.8
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.6e-148 530.4 468 60.0
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.9e-144 516.9 375 72.5
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 3.5e-135 486.1 560 48.4
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.3e-133 479.2 573 46.2
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 4.8e-132 475.7 376 65.7
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 3.8e-129 466.1 539 48.4
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 6.0e-119 432.2 390 62.3
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.8e-102 377.5 306 56.9
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 2.5e-101 373.6 504 43.3
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 9.7e-101 371.7 617 38.2
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.6e-85 320.5 321 58.6
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 1.2e-66 258.5 165 80.6
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.9e-64 251.1 244 57.8
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.7e-57 228.0 459 32.0
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 4.7e-55 219.9 229 56.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.1e-48 198.7 98 91.8
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 9.5e-48 195.7 464 30.2
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 2.8e-47 194.1 169 60.4
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 6.2e-47 193.0 420 32.4
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.0e-45 188.0 91 94.5
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.4e-43 181.8 403 34.7
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 4.6e-42 176.8 106 82.1
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 3.3e-40 170.6 150 68.0
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 4.7e-39 166.8 437 29.5
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.4e-37 160.6 210 44.3
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 3.7e-36 157.1 98 77.6
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 1.4e-35 155.2 165 64.2
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 8.4e-28 129.4 86 70.9
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 9.3e-19 99.4 162 37.7
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 5.3e-14 83.6 40 95.0
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.6e-13 81.3 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 8.4e-12 76.3 48 72.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 2.7e-10 71.2 37 83.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 6.7e-09 66.6 33 84.8
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 3.3e-08 64.3 57 57.9
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 2.1e-07 61.6 232 25.0
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 2.1e-07 61.6 243 25.9
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 2.1e-07 61.6 243 25.9
Ah.01g023330 Amaranthus hybridus HOM05D002236 ORTHO05D002341 4.8e-07 60.5 369 21.1
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 4.8e-07 60.5 243 25.1
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 4.8e-07 60.5 243 25.1
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 1.1e-06 59.3 248 24.2
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 1.4e-06 58.9 243 25.1
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 3.1e-06 57.8 99 38.4
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 5.3e-06 57.0 74 37.8
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 9.0e-06 56.2 243 23.9
BcaC06g34176 Brassica carinata HOM05D000137 ORTHO05D001928 9.0e-06 56.2 239 23.8
Gohir.D01G058500 Gossypium hirsutum HOM05D002303 ORTHO05D007639 9.0e-06 56.2 319 22.6


User provided reference genes

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