Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.4e-92 342.8 164 100.0
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 4.8e-72 274.6 165 81.2
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 2.2e-64 249.2 173 72.8
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.9e-44 183.0 169 59.2
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 6.8e-42 174.5 170 54.1
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 6.4e-40 167.9 168 52.4
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 2.4e-39 166.0 137 60.6
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.2e-39 165.6 191 48.7
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 2.0e-38 162.9 206 46.6
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 2.0e-38 162.9 206 46.6
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 4.6e-38 161.8 130 62.3
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.9e-37 158.7 136 60.3
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 8.6e-37 157.5 136 57.4
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 8.6e-37 157.5 192 48.4
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 8.6e-37 157.5 168 54.2
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.5e-36 156.8 137 56.9
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.5e-36 156.8 201 48.3
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 1.5e-36 156.8 145 56.6
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.5e-36 156.0 123 62.6
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 7.3e-36 154.5 126 59.5
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 9.5e-36 154.1 136 59.6
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 9.5e-36 154.1 193 48.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.6e-35 153.3 192 48.4
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 4.7e-35 151.8 123 63.4
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 8.0e-35 151.0 206 44.7
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 2.3e-34 149.4 177 49.2
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.3e-34 149.4 169 47.9
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.1e-34 149.1 198 43.9
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.0e-34 148.7 169 47.9
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 6.8e-34 147.9 162 50.0
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 6.8e-34 147.9 181 47.0
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 8.9e-34 147.5 137 55.5
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.0e-33 146.4 180 46.1
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.6e-33 146.0 134 56.7
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 5.8e-33 144.8 153 52.3
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 2.2e-32 142.9 152 50.7
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 2.9e-32 142.5 186 45.7
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.9e-32 142.5 115 61.7
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.7e-32 142.1 176 48.3
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 3.7e-32 142.1 138 55.8
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 4.9e-32 141.7 120 59.2
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 4.9e-32 141.7 192 46.4
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 4.9e-32 141.7 118 58.5
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 4.9e-32 141.7 126 58.7
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 8.3e-32 141.0 99 66.7
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 1.4e-31 140.2 166 46.4
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.4e-31 140.2 178 47.2
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 7.0e-31 137.9 126 53.2
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 9.2e-31 137.5 92 67.4
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.2e-30 137.1 139 50.4
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.6e-30 136.7 129 54.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.7e-30 136.0 198 43.9
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 6.0e-30 134.8 115 59.1
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 7.8e-30 134.4 129 54.3
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.0e-29 134.0 121 53.7
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.0e-29 134.0 130 53.1
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 1.3e-29 133.7 86 72.1
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.7e-29 133.3 151 49.0
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.3e-29 132.9 170 44.1
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 3.0e-29 132.5 163 48.5
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 5.0e-29 131.7 84 69.0
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 6.6e-29 131.3 184 42.9
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 6.6e-29 131.3 200 42.5
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 6.6e-29 131.3 134 53.0
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 8.6e-29 131.0 137 52.6
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.6e-29 131.0 131 51.1
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-28 130.6 183 44.8
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.5e-28 130.2 125 52.0
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.5e-28 130.2 137 52.6
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.9e-28 129.8 107 62.6
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.5e-28 129.4 201 40.8
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.5e-28 129.4 111 57.7
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 3.3e-28 129.0 129 52.7
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 3.3e-28 129.0 161 46.0
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 7.3e-28 127.9 135 50.4
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 7.3e-28 127.9 135 50.4
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 7.3e-28 127.9 140 49.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 7.3e-28 127.9 129 51.9
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-27 127.1 168 45.2
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.2e-27 127.1 130 51.5
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.6e-27 126.7 135 49.6
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.8e-27 125.9 86 67.4
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.1e-26 124.0 171 43.9
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.4e-26 123.6 181 43.6
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-26 122.9 84 70.2
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 3.1e-26 122.5 124 52.4
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.1e-26 122.5 84 69.0
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.8e-26 121.3 84 69.0
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.5e-25 120.2 125 53.6
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.0e-25 119.8 86 64.0
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-25 119.0 126 54.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.4e-25 118.6 174 43.7
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.5e-25 117.9 84 67.9
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.5e-25 117.9 84 67.9
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.9e-25 117.5 84 66.7
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 9.9e-25 117.5 90 60.0
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 1.3e-24 117.1 219 37.4
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-23 114.0 84 66.7
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.4e-23 113.6 150 46.7
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.4e-23 113.6 150 46.7
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.9e-23 113.2 111 51.4
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 4.1e-23 112.1 125 48.8
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.1e-23 112.1 171 43.9
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 7.1e-23 111.3 115 52.2
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 2.1e-22 109.8 86 58.1
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 2.1e-22 109.8 86 58.1
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 2.1e-22 109.8 129 49.6
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 6.0e-22 108.2 125 49.6
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 6.0e-22 108.2 137 46.7
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.0e-21 107.5 86 55.8
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.0e-21 107.5 86 55.8
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.0e-21 107.5 86 55.8
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.3e-21 107.1 138 44.9
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.0e-21 105.9 140 45.7
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 6.6e-21 104.8 134 43.3
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.1e-20 104.0 129 44.2
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.1e-20 104.0 163 41.1
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.5e-20 102.8 196 40.3
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 9.5e-20 100.9 144 42.4
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.2e-19 100.5 190 37.9
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.2e-19 100.5 110 45.5
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.6e-19 100.1 110 45.5
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.6e-19 100.1 123 47.2
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 2.1e-19 99.8 137 43.1
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.6e-19 99.0 87 58.6
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 3.6e-19 99.0 127 45.7
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 1.4e-18 97.1 125 42.4
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.4e-18 97.1 144 42.4
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.4e-18 97.1 195 35.4
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-17 94.0 84 53.6
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.2e-17 94.0 84 53.6
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.5e-17 93.6 135 45.9
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 2.6e-17 92.8 197 37.6
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 2.6e-17 92.8 168 41.1
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.4e-17 92.4 136 43.4
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.4e-17 92.4 136 43.4
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.4e-17 92.4 84 54.8
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 2.2e-16 89.7 136 43.4
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 2.2e-16 89.7 136 43.4
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 6.4e-16 88.2 97 48.5
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 8.4e-16 87.8 97 49.5
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-15 86.7 128 42.2
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 1.9e-15 86.7 128 42.2
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 2.4e-15 86.3 86 50.0
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 3.2e-15 85.9 129 41.9
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 3.2e-15 85.9 129 41.9
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 9.2e-15 84.3 60 65.0
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 3.5e-14 82.4 86 48.8
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 3.5e-14 82.4 86 48.8
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.0e-13 80.9 86 47.7
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.0e-13 80.9 78 51.3
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.0e-13 80.9 167 31.1
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.0e-13 80.9 165 30.3
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.3e-13 80.5 91 47.3
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-13 80.5 137 37.2
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.1e-11 73.2 124 41.1
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.7e-11 72.0 97 42.3
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-10 70.5 82 46.3
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 1.4e-10 70.5 129 38.8
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.1e-10 69.3 84 46.4
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.3e-08 63.9 84 42.9
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.2e-08 63.2 115 33.9
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 4.9e-08 62.0 84 42.9
Nitab4.5_0005414g0060 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.9e-08 62.0 114 34.2
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 2.4e-07 59.7 178 28.7
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 1.6e-06 57.0 177 29.9
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 6.0e-06 55.1 50 56.0


User provided reference genes

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