Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 7.2e-136 487.3 250 100.0
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.2e-109 400.2 221 94.6
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.4e-94 350.1 260 74.6
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.9e-92 342.4 259 74.5
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 7.8e-82 307.8 232 72.4
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 2.3e-81 306.2 232 72.0
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.6e-79 300.1 249 69.9
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 7.9e-74 281.2 246 65.4
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.8e-73 280.0 259 61.4
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 8.7e-73 277.7 248 62.9
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 7.4e-72 274.6 229 65.5
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.6e-71 273.5 247 63.6
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.8e-71 272.7 266 60.5
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 6.2e-71 271.6 245 63.7
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.4e-70 270.4 234 62.0
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 6.9e-70 268.1 230 64.8
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.9e-70 268.1 231 63.2
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 5.8e-69 265.0 250 61.6
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 7.6e-69 264.6 236 63.1
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.7e-68 263.5 234 62.8
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.7e-68 263.5 251 57.8
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.9e-68 262.7 247 61.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 2.9e-68 262.7 251 59.4
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.8e-68 262.3 259 58.7
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 8.4e-68 261.2 235 61.3
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 8.4e-68 261.2 257 59.9
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.1e-67 260.8 244 59.4
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.1e-67 260.8 248 60.1
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.4e-67 260.4 235 61.3
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.1e-67 258.1 249 58.6
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 9.3e-67 257.7 227 62.1
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 9.3e-67 257.7 234 62.0
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 9.3e-67 257.7 220 63.6
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 2.1e-66 256.5 248 60.5
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.7e-66 256.1 244 59.0
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 4.6e-66 255.4 246 59.3
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 6.0e-66 255.0 250 59.6
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 6.0e-66 255.0 278 54.7
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 6.0e-66 255.0 257 56.4
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 6.0e-66 255.0 248 56.9
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.9e-66 254.6 244 58.2
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 1.3e-65 253.8 234 59.8
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.3e-65 253.8 256 55.5
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.8e-65 253.4 251 57.8
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.3e-65 253.1 244 58.6
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.3e-65 253.1 245 58.4
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.0e-65 252.7 227 60.4
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 6.7e-65 251.5 232 59.5
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.7e-65 251.1 258 56.2
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.1e-64 250.8 259 55.2
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-64 250.8 260 56.2
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.9e-64 250.0 234 58.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.9e-64 250.0 237 60.8
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 4.3e-64 248.8 245 58.0
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.3e-64 248.8 247 54.7
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 5.6e-64 248.4 234 59.8
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 5.6e-64 248.4 247 55.5
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.3e-63 247.3 235 59.1
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.3e-63 247.3 259 56.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.3e-63 247.3 238 59.7
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.1e-63 246.5 249 57.0
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 2.1e-63 246.5 248 57.3
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 3.7e-63 245.7 248 56.5
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.8e-63 245.4 260 54.6
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 4.8e-63 245.4 249 55.0
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.2e-63 245.0 247 55.1
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.2e-63 245.0 245 55.1
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 6.2e-63 245.0 246 54.9
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 8.1e-63 244.6 248 55.6
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.4e-62 243.8 244 57.4
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.8e-62 243.4 245 54.3
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 2.4e-62 243.0 270 51.1
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.4e-62 243.0 242 56.2
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 3.1e-62 242.7 246 54.1
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 5.3e-62 241.9 247 54.3
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 1.2e-61 240.7 235 55.3
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.2e-61 240.7 235 57.9
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 2.6e-61 239.6 233 57.5
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.6e-61 239.6 247 54.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.4e-61 239.2 249 55.8
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 4.5e-61 238.8 249 55.4
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 5.8e-61 238.4 195 64.1
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 5.8e-61 238.4 246 54.5
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 7.6e-61 238.0 235 57.0
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.0e-60 237.7 246 54.1
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.3e-60 237.3 244 54.9
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.3e-60 237.3 246 54.5
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.7e-60 236.9 231 55.4
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 4.9e-60 235.3 201 60.7
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.4e-59 233.8 225 57.8
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.4e-59 233.8 225 56.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.5e-59 233.0 245 54.3
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 4.2e-59 232.3 243 55.1
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 5.5e-59 231.9 246 57.3
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 9.3e-59 231.1 220 57.3
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.2e-58 230.7 293 48.1
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.6e-58 230.3 220 57.7
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.6e-58 230.3 220 57.7
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.6e-58 230.3 236 55.9
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.6e-58 230.3 244 54.1
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 3.5e-58 229.2 237 55.3
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 4.6e-58 228.8 231 58.0
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 4.6e-58 228.8 220 56.8
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 4.6e-58 228.8 220 56.8
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 7.9e-58 228.0 236 55.9
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.3e-57 227.3 242 55.0
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.3e-57 227.3 220 57.7
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 3.0e-57 226.1 165 71.5
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 6.7e-57 224.9 193 61.1
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 8.7e-57 224.6 246 49.6
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.5e-56 223.8 232 54.7
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 4.3e-56 222.2 284 48.9
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 2.1e-55 219.9 242 52.1
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 2.1e-55 219.9 242 52.1
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.8e-55 219.5 284 48.6
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.1e-54 217.6 244 51.6
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.5e-53 213.8 193 62.2
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.2e-50 204.1 186 58.6
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 3.0e-49 199.5 233 50.2
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.5e-48 197.2 240 50.4
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.3e-48 196.1 156 66.0
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 4.3e-48 195.7 166 60.8
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 5.7e-48 195.3 166 60.8
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 4.8e-47 192.2 220 48.2
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.2e-45 187.6 120 73.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 5.9e-45 185.3 233 48.1
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.6e-42 177.2 232 52.2
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 1.1e-40 171.0 232 47.4
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.5e-40 170.6 123 65.9
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.8e-39 166.4 135 60.0
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 4.8e-39 165.6 239 43.9
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.0e-37 160.2 246 42.7
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.4e-33 147.5 231 40.7
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 2.3e-33 146.7 230 39.1
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.3e-32 142.9 112 70.5
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.6e-29 134.0 175 47.4
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 3.2e-27 126.3 188 41.0
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.6e-26 122.9 143 48.3
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.1e-26 122.1 134 49.3
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.4e-25 120.9 80 68.8
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.8e-25 120.6 134 49.3
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 3.0e-25 119.8 133 48.9
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.6e-21 107.5 89 62.9
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 4.2e-19 99.4 119 48.7
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 3.0e-17 93.2 119 47.1
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 3.0e-17 93.2 119 47.1
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 3.0e-17 93.2 119 47.1
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.0e-16 90.5 192 34.4
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.3e-15 87.8 193 35.2
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 8.3e-15 85.1 135 43.7
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 7.2e-11 72.0 101 42.6
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.2e-10 71.2 59 62.7
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 2.6e-08 63.5 44 63.6
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 4.4e-08 62.8 104 39.4
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.8e-06 57.4 73 52.1
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 2.4e-06 57.0 35 71.4


User provided reference genes

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