Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1900.9 959 100.0
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1792.3 959 94.1
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1739.2 959 91.7
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1632.8 959 86.2
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1597.8 959 83.6
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1563.5 954 84.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1508.0 953 80.3
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1507.3 953 80.4
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1486.9 972 78.5
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1447.2 801 91.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1329.3 959 70.6
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1326.6 960 70.6
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1312.4 959 69.3
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1303.9 959 69.4
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1293.1 959 68.4
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1290.0 959 68.0
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1283.5 960 68.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1271.9 960 67.8
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 959 66.7
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1259.2 959 67.0
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1253.0 960 67.1
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1248.0 959 67.6
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1247.6 959 66.7
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1229.9 960 66.2
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1229.2 959 66.0
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1026 62.6
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1207.2 961 64.5
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1201.8 959 63.6
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1199.5 959 64.5
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1198.7 961 64.2
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1196.0 959 63.5
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1195.3 961 64.0
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1191.8 969 63.4
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1191.0 960 62.8
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1191.0 966 64.3
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1182.9 961 63.5
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1182.5 967 63.6
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1181.0 959 62.0
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1176.8 959 62.1
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1175.6 959 63.0
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1174.1 959 62.0
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1170.6 682 86.2
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1166.8 1026 59.6
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1166.0 959 63.2
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1164.1 959 61.5
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1162.1 965 62.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1162.1 960 61.6
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1161.4 997 62.8
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1157.1 960 61.6
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1156.7 961 63.8
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1156.4 961 60.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1156.0 960 61.4
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1151.3 960 61.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1148.7 959 62.1
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1148.7 959 60.7
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1147.5 959 62.1
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1146.0 963 61.3
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1143.6 959 61.9
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1140.9 959 61.4
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1134.4 961 60.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1133.6 960 61.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1133.2 976 59.9
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1130.2 1001 60.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1123.6 914 64.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1120.1 962 60.5
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1116.3 959 59.7
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1113.2 960 61.7
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1109.4 1027 55.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1108.2 959 61.1
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1107.4 907 61.6
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1106.7 960 60.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1104.7 970 58.5
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1092.0 1021 55.8
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1090.9 960 59.4
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1090.9 960 59.4
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1087.8 963 58.5
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1086.2 948 60.4
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1085.5 960 59.3
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1085.5 944 60.7
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1084.7 963 59.3
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1083.9 960 59.0
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1083.6 960 59.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1082.4 944 58.5
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1078.5 963 59.4
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1077.0 964 57.4
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1075.1 959 58.7
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 1.3e-310 1069.7 960 57.4
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 1.7e-310 1069.3 959 58.4
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 3.8e-310 1068.1 960 58.2
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.8e-310 1068.1 948 59.6
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 1.2e-308 1063.1 756 70.8
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 1.5e-306 1056.2 959 56.9
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 7.4e-306 1053.9 959 57.9
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 1.3e-305 1053.1 960 57.9
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 6.3e-305 1050.8 848 64.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 3.1e-304 1048.5 962 57.7
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 5.3e-304 1047.7 959 57.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 3.0e-299 1031.9 973 56.4
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 2.0e-298 1029.2 960 56.6
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 1.7e-297 1026.2 977 56.0
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 2.2e-297 1025.8 953 56.6
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 7.0e-296 1020.8 885 58.9
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 4.5e-295 1018.1 953 56.0
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 1.9e-285 986.1 956 53.7
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.8e-267 926.4 611 74.1
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 3.4e-266 922.2 966 51.3
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.0e-255 886.3 926 51.9
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 2.0e-250 869.8 989 48.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.0e-238 829.3 592 67.7
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.3e-229 798.9 971 45.8
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.4e-227 793.1 912 48.6
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 2.6e-226 789.6 823 50.9
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.0e-214 749.6 990 43.3
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 2.5e-213 746.5 883 47.7
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.0e-206 723.0 488 72.3
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.0e-202 710.3 987 42.0
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 8.5e-193 678.3 971 41.3
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 3.2e-123 447.2 958 33.5
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.6e-119 434.9 964 33.0
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.4e-117 426.8 331 61.3
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.0e-110 403.7 230 87.0
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.3e-102 376.7 231 82.7
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 6.7e-97 359.8 232 74.6
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.1e-94 352.4 314 57.3
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.4e-83 315.5 527 38.7
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 3.6e-74 284.3 977 25.8
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 9.4e-67 259.6 381 42.0
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.7e-66 258.1 258 55.0
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.9e-66 256.5 261 54.4
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 4.7e-58 230.7 232 52.2
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-57 228.4 212 57.5
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 9.7e-56 223.0 226 54.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.3e-49 201.8 213 51.2
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 2.0e-48 198.7 166 60.2
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.3e-44 185.3 156 59.0
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-43 183.0 175 56.6
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-43 183.0 175 56.6
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-43 183.0 175 56.6
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.2e-43 181.0 175 56.0
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 9.5e-43 179.9 175 56.0
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.2e-40 172.9 239 43.9
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.3e-39 169.5 241 46.9
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 5.9e-37 160.6 143 55.9
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.5e-35 155.2 175 51.4
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.0e-33 149.8 81 88.9
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 9.8e-32 143.3 262 35.1
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.7e-31 142.5 261 36.4
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.4e-30 139.4 262 35.1
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 8.6e-28 130.2 219 34.7
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.2e-23 115.5 73 72.6
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.9e-19 102.4 76 60.5
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 3.6e-18 98.2 130 43.8
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 8.1e-18 97.1 58 72.4
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 4.4e-16 91.3 211 30.3
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 2.2e-15 89.0 55 76.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 8.1e-10 70.5 170 31.2


User provided reference genes

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