Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 2.2e-160 568.9 298 100.0
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.7e-123 446.4 290 79.3
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 5.4e-122 441.4 294 77.2
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 8.7e-96 354.4 285 67.0
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 3.3e-95 352.4 291 66.0
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 2.2e-91 339.7 279 67.0
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 4.2e-82 308.9 324 53.1
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 4.2e-82 308.9 291 57.7
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 2.5e-74 283.1 171 84.8
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 1.2e-65 254.2 352 44.0
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 9.7e-63 244.6 292 47.9
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 1.7e-62 243.8 292 47.9
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 4.1e-61 239.2 276 48.6
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 1.3e-59 234.2 301 48.2
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 2.9e-59 233.0 286 45.5
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 5.0e-59 232.3 212 60.4
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 5.0e-59 232.3 306 45.1
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.7e-57 226.5 305 44.9
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.4e-56 224.2 279 47.7
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 1.4e-56 224.2 286 48.3
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.8e-56 223.8 285 48.1
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 2.3e-56 223.4 358 40.8
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 8.8e-56 221.5 376 39.6
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.6e-55 219.9 294 43.2
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 5.7e-55 218.8 277 45.5
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 7.5e-55 218.4 280 48.6
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 7.5e-55 218.4 280 48.6
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.7e-54 217.2 304 42.1
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.7e-54 216.1 280 48.2
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 1.1e-53 214.5 287 46.0
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 1.1e-53 214.5 326 42.3
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 2.4e-53 213.4 331 42.0
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.1e-53 213.0 280 44.3
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 1.6e-52 210.7 329 41.3
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.0e-52 210.3 330 42.4
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.9e-52 208.8 280 44.3
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 5.9e-52 208.8 329 42.9
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.3e-51 207.6 285 45.6
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.7e-51 207.2 347 38.0
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 2.9e-51 206.5 324 40.7
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 6.5e-51 205.3 332 41.0
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.5e-51 204.9 317 39.7
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 8.5e-51 204.9 329 41.3
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.1e-50 204.5 281 42.3
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 3.2e-50 203.0 279 42.3
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 9.4e-50 201.4 221 52.0
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.2e-49 201.1 315 39.4
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 4.7e-49 199.1 290 42.1
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.0e-49 198.4 273 42.5
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 3.0e-48 196.4 309 40.1
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.0e-48 196.4 276 42.0
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 3.4e-47 193.0 292 41.4
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 4.4e-47 192.6 287 42.5
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 6.3e-46 188.7 292 40.1
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 3.1e-45 186.4 292 40.4
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 7.0e-45 185.3 110 88.2
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 9.1e-45 184.9 340 38.2
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 3.5e-44 183.0 166 60.2
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 5.0e-43 179.1 281 38.8
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.1e-42 177.9 274 38.3
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.6e-41 174.1 327 37.9
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 2.1e-41 173.7 324 40.4
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 5.2e-40 169.1 295 35.6
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 6.8e-40 168.7 281 38.8
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 6.8e-40 168.7 191 53.4
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 3.1e-37 159.8 297 38.7
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.7e-36 156.8 361 33.2
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 4.5e-36 156.0 261 39.5
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 1.3e-35 154.5 353 33.4
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.3e-35 154.5 276 36.2
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 8.0e-33 145.2 293 36.5
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.0e-32 144.8 269 35.3
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 2.2e-30 137.1 294 33.3
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.8e-29 134.0 295 32.2
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.3e-27 127.9 117 57.3
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.7e-27 127.5 287 32.1
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 1.1e-26 124.8 195 42.6
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.5e-26 124.4 287 31.4
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 2.5e-26 123.6 283 31.1
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.6e-25 120.9 102 60.8
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 2.8e-25 120.2 210 38.6
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 8.0e-25 118.6 285 32.3
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 2.3e-24 117.1 283 32.5
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 2.3e-24 117.1 295 31.2
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 2.3e-24 117.1 295 31.2
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.3e-24 117.1 288 29.2
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 4.0e-24 116.3 286 30.4
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 4.0e-24 116.3 279 31.2
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 5.2e-24 115.9 289 29.4
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 2.2e-22 110.5 189 40.2
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 2.9e-22 110.2 282 31.9
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 3.2e-21 106.7 153 44.4
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 4.6e-20 102.8 286 31.5
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.3e-19 101.3 143 42.7
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 4.3e-18 96.3 220 30.9
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 5.6e-18 95.9 291 27.1
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 2.1e-17 94.0 150 36.0
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.1e-17 94.0 292 27.1
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 3.6e-17 93.2 124 44.4
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 4.7e-17 92.8 275 29.1
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 6.2e-17 92.4 75 60.0
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 6.2e-17 92.4 219 32.0
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 1.1e-16 91.7 286 29.7
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 1.8e-16 90.9 287 28.9
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 5.2e-16 89.4 286 29.0
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 5.2e-16 89.4 213 29.1
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 6.8e-16 89.0 149 38.3
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 8.9e-16 88.6 287 27.5
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 2.0e-15 87.4 287 28.2
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 7.5e-15 85.5 153 35.3
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.3e-14 84.7 139 35.3
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.7e-14 84.3 283 26.5
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.4e-13 81.3 133 35.3
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 3.2e-13 80.1 134 35.8
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.3e-11 74.7 98 45.9
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 2.3e-11 73.9 102 44.1
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 2.3e-11 73.9 98 45.9
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 3.3e-10 70.1 93 44.1
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 2.1e-09 67.4 91 41.8
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.8e-09 67.0 63 57.1
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.6e-09 66.6 63 57.1
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 1.4e-08 64.7 95 33.7
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 3.1e-08 63.5 116 31.0
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.1e-08 63.5 76 51.3
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 3.1e-08 63.5 101 36.6
Medtr2g437500 Medicago truncatula HOM05D000336 ORTHO05D002705 1.2e-07 61.6 90 35.6
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 2.0e-07 60.8 102 30.4
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 2.0e-07 60.8 138 30.4
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 3.4e-07 60.1 99 28.3
Duzib106G1105 Durio zibethinus HOM05D000336 ORTHO05D002705 7.6e-07 58.9 92 30.4
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 7.6e-07 58.9 130 26.9
Eucgr.F03145 Eucalyptus grandis HOM05D000336 ORTHO05D002705 9.9e-07 58.5 109 27.5
Lj4g0015179 Lotus japonicus HOM05D000336 ORTHO05D002705 9.9e-07 58.5 127 28.3
Phvul.004G074600 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 9.9e-07 58.5 105 30.5
unitig_32.g10850 Utricularia gibba HOM05D000336 ORTHO05D002705 9.9e-07 58.5 138 29.0
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.3e-06 58.2 104 29.8
Eucgr.G02811 Eucalyptus grandis HOM05D000336 ORTHO05D002705 1.7e-06 57.8 139 23.0
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.7e-06 57.8 116 31.9
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 2.2e-06 57.4 139 25.2
Manes.03G072850 Manihot esculenta HOM05D000336 ORTHO05D002705 2.2e-06 57.4 104 28.8
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 2.2e-06 57.4 66 42.4
Hund00980 Selenicereus undatus HOM05D000336 ORTHO05D000593 2.9e-06 57.0 68 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2756 Anthoceros agrestis HOM05D000336 ORTHO05D000593 3.8e-06 56.6 76 36.8
Cpa.g.sc30.64 Carica papaya HOM05D000336 ORTHO05D002705 3.8e-06 56.6 99 29.3
Sabra10G0169200 Salix brachista HOM05D000336 ORTHO05D002705 3.8e-06 56.6 140 23.6
GSVIVG01020670001 Vitis vinifera HOM05D000336 ORTHO05D000593 3.8e-06 56.6 71 42.3
CANSAT54G2317 Cannabis sativa HOM05D000336 ORTHO05D002705 4.9e-06 56.2 104 26.9
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 4.9e-06 56.2 101 27.7
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 4.9e-06 56.2 101 27.7
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 4.9e-06 56.2 101 27.7
Psat6g044640 Pisum sativum HOM05D000336 ORTHO05D002705 4.9e-06 56.2 107 31.8
GSVIVG01014233001 Vitis vinifera HOM05D000336 ORTHO05D000593 4.9e-06 56.2 71 40.8
HanXRQChr17g0565331 Helianthus annuus HOM05D000336 ORTHO05D000593 6.4e-06 55.8 74 41.9
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 6.4e-06 55.8 139 23.0
Potri.001G376400 Populus trichocarpa HOM05D000336 ORTHO05D000593 6.4e-06 55.8 67 41.8
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 6.4e-06 55.8 108 28.7
Thecc.10G069700 Theobroma cacao HOM05D000336 ORTHO05D002705 6.4e-06 55.8 96 28.1
CANSAT54G1049 Cannabis sativa HOM05D000336 ORTHO05D002705 8.4e-06 55.5 104 26.9
Cc03_g05840 Coffea canephora HOM05D000336 ORTHO05D002705 8.4e-06 55.5 103 27.2
Migut.F01763 Erythranthe guttata HOM05D000336 ORTHO05D002705 8.4e-06 55.5 96 28.1
Lsat_1_v5_gn_4_27481 Lactuca sativa HOM05D000336 ORTHO05D000593 8.4e-06 55.5 71 40.8
Lj3g0006084 Lotus japonicus HOM05D000336 ORTHO05D000593 8.4e-06 55.5 71 39.4
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 8.4e-06 55.5 111 30.6
TWI60G1326 Tripterygium wilfordii HOM05D000336 ORTHO05D002705 8.4e-06 55.5 101 25.7


User provided reference genes

Program Settings