Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 1.2e-34 149.1 66 100.0
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 8.3e-23 109.8 79 72.2
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 8.3e-23 109.8 79 72.2
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.6e-21 105.5 79 68.4
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 6.6e-20 100.1 79 67.1
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.9e-19 98.6 79 64.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 7.2e-19 96.7 79 62.0
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 3.6e-18 94.4 79 59.5
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 4.7e-18 94.0 79 58.2
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 6.1e-18 93.6 79 59.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.0e-17 92.8 79 59.5
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.0e-17 92.8 79 59.5
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.0e-17 92.8 68 64.7
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.8e-17 92.0 79 59.5
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 1.8e-17 92.0 79 59.5
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 2.3e-17 91.7 79 58.2
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.3e-17 91.7 79 58.2
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 3.0e-17 91.3 79 58.2
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 3.0e-17 91.3 79 60.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.0e-17 91.3 79 58.2
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 4.0e-17 90.9 79 58.2
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.0e-17 90.9 79 58.2
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 5.2e-17 90.5 79 58.2
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 5.2e-17 90.5 79 58.2
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 5.2e-17 90.5 79 57.0
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 6.8e-17 90.1 79 58.2
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 6.8e-17 90.1 79 58.2
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 6.8e-17 90.1 79 57.0
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 6.8e-17 90.1 79 57.0
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 6.8e-17 90.1 79 58.2
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.9e-17 89.7 77 58.4
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 1.2e-16 89.4 54 77.8
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.2e-16 89.4 79 58.2
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.5e-16 89.0 79 57.0
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.5e-16 89.0 79 57.0
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 2.6e-16 88.2 79 57.0
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.6e-16 88.2 79 57.0
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 2.6e-16 88.2 79 57.0
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 3.4e-16 87.8 79 57.0
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 3.4e-16 87.8 79 57.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 3.4e-16 87.8 79 55.7
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 5.7e-16 87.0 79 55.7
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 5.7e-16 87.0 79 55.7
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 5.7e-16 87.0 79 57.0
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 5.7e-16 87.0 79 53.2
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 5.7e-16 87.0 79 55.7
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 7.5e-16 86.7 79 54.4
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 7.5e-16 86.7 79 57.0
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 7.5e-16 86.7 79 54.4
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 9.8e-16 86.3 79 55.7
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 9.8e-16 86.3 78 57.7
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.3e-15 85.9 52 76.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 1.3e-15 85.9 79 55.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.3e-15 85.9 79 54.4
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.3e-15 85.9 79 55.7
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.7e-15 85.5 79 55.7
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 2.2e-15 85.1 79 55.7
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.2e-15 85.1 79 54.4
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.2e-15 85.1 53 75.5
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 2.2e-15 85.1 79 55.7
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 2.8e-15 84.7 79 53.2
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 2.8e-15 84.7 79 54.4
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 2.8e-15 84.7 79 54.4
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 2.8e-15 84.7 79 55.7
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.8e-15 84.7 79 54.4
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.7e-15 84.3 87 52.9
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 55.7
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 8.3e-15 83.2 79 54.4
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.1e-14 82.8 79 53.2
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-14 82.4 85 51.8
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-14 82.4 85 51.8
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.4e-14 82.4 52 73.1
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.8e-14 82.0 79 55.7
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.8e-14 82.0 79 55.7
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 3.1e-14 81.3 79 54.4
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 4.1e-14 80.9 79 53.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.1e-14 80.9 79 54.4
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 5.4e-14 80.5 79 54.4
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.2e-13 79.3 57 66.7
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.2e-13 79.3 57 66.7
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 4.5e-13 77.4 54 66.7
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 4.5e-13 77.4 54 66.7
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 4.5e-13 77.4 79 50.6
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 4.5e-13 77.4 79 53.2
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 6.6e-12 73.6 52 67.3
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.1e-11 72.8 68 54.4
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 4.3e-11 70.9 42 76.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.3e-09 65.1 72 48.6
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 5.8e-08 60.5 54 57.4
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 4.9e-07 57.4 79 43.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 6.4e-07 57.0 54 53.7
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.4e-06 55.1 54 55.6
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 7.0e-06 53.5 55 50.9


User provided reference genes

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