Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 3.5e-54 214.5 97 100.0
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 5.1e-53 210.7 97 99.0
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 8.6e-53 209.9 97 97.9
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 2.2e-48 195.3 94 91.5
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 1.1e-47 193.0 93 91.4
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 1.1e-47 193.0 93 91.4
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 1.1e-47 193.0 97 90.7
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 1.4e-47 192.6 93 93.5
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 2.1e-46 188.7 97 83.5
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 6.0e-46 187.2 97 84.5
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 7.8e-46 186.8 97 82.5
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 1.0e-45 186.4 96 84.4
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 1.0e-45 186.4 119 77.3
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 3.0e-45 184.9 97 85.6
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 3.0e-45 184.9 96 84.4
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 1.1e-44 183.0 97 81.4
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 1.9e-44 182.2 97 81.4
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 3.3e-44 181.4 93 83.9
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 7.3e-44 180.3 93 83.9
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 9.6e-44 179.9 97 81.4
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.2e-43 179.5 91 83.5
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 1.2e-43 179.5 93 82.8
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 1.2e-43 179.5 93 82.8
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 1.6e-43 179.1 92 83.7
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 2.1e-43 178.7 93 81.7
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 2.8e-43 178.3 94 79.8
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 2.8e-43 178.3 91 83.5
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 3.6e-43 177.9 92 83.7
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 3.6e-43 177.9 92 82.6
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 3.6e-43 177.9 92 82.6
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 3.6e-43 177.9 95 81.1
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 4.7e-43 177.6 94 80.9
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.2e-43 177.2 95 80.0
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 6.2e-43 177.2 95 80.0
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 8.1e-43 176.8 92 82.6
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 8.1e-43 176.8 92 81.5
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 8.1e-43 176.8 92 81.5
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 8.1e-43 176.8 92 81.5
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.1e-42 176.4 93 80.6
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.1e-42 176.4 93 80.6
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 1.1e-42 176.4 95 80.0
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 1.4e-42 176.0 95 80.0
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 1.4e-42 176.0 93 81.7
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 1.4e-42 176.0 93 80.6
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 2.4e-42 175.3 95 78.9
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 3.1e-42 174.9 92 81.5
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 3.1e-42 174.9 93 80.6
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 3.1e-42 174.9 93 79.6
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 4.0e-42 174.5 97 78.4
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 4.0e-42 174.5 92 81.5
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 9.0e-42 173.3 92 81.5
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 1.2e-41 172.9 93 81.7
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 1.2e-41 172.9 91 82.4
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.0e-41 172.2 95 78.9
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 2.6e-41 171.8 93 78.5
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 3.4e-41 171.4 93 77.4
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 4.4e-41 171.0 91 80.2
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 4.4e-41 171.0 91 80.2
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 4.4e-41 171.0 91 81.3
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 4.4e-41 171.0 94 78.7
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 4.4e-41 171.0 93 76.3
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 4.4e-41 171.0 97 77.3
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 5.8e-41 170.6 92 76.1
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 7.6e-41 170.2 91 81.3
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 9.9e-41 169.9 89 80.9
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 9.9e-41 169.9 91 78.0
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 1.3e-40 169.5 92 76.1
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 1.3e-40 169.5 92 76.1
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 1.7e-40 169.1 91 78.0
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 2.2e-40 168.7 93 75.3
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 3.8e-40 167.9 93 74.2
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 3.8e-40 167.9 91 78.0
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 4.9e-40 167.5 93 76.3
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 8.4e-40 166.8 92 79.3
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 1.4e-39 166.0 93 75.3
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 2.4e-39 165.2 92 78.3
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 2.4e-39 165.2 91 79.1
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 2.4e-39 165.2 93 74.2
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 4.2e-39 164.5 93 74.2
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.2e-39 164.5 93 74.2
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 4.2e-39 164.5 91 78.0
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 5.4e-39 164.1 89 78.7
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 7.1e-39 163.7 92 76.1
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 7.1e-39 163.7 94 76.6
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 9.3e-39 163.3 94 76.6
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.2e-38 162.9 86 81.4
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 2.1e-38 162.2 92 79.3
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 4.6e-38 161.0 93 72.0
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 6.0e-38 160.6 93 68.8
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 6.0e-38 160.6 91 73.6
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 7.8e-38 160.2 113 63.7
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 7.8e-38 160.2 92 77.2
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 7.8e-38 160.2 95 70.5
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 7.8e-38 160.2 95 70.5
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 2.3e-37 158.7 88 76.1
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.9e-37 157.9 91 73.6
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 3.9e-37 157.9 91 73.6
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 3.9e-37 157.9 94 72.3
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 1.9e-36 155.6 87 74.7
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 1.9e-36 155.6 94 69.1
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 2.5e-36 155.2 98 71.4
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 3.3e-36 154.8 93 69.9
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 3.3e-36 154.8 91 72.5
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 4.3e-36 154.5 93 74.2
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 5.6e-36 154.1 91 72.5
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 2.8e-35 151.8 94 69.1
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 3.6e-35 151.4 83 78.3
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 1.1e-34 149.8 78 79.5
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 2.4e-34 148.7 91 67.0
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 3.1e-34 148.3 104 65.4
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 4.0e-34 147.9 91 69.2
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 5.3e-34 147.5 91 69.2
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 6.9e-34 147.1 91 69.2
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 9.0e-34 146.7 89 69.7
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 9.0e-34 146.7 89 69.7
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 9.0e-34 146.7 89 69.7
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 2.6e-33 145.2 89 68.5
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 2.6e-33 145.2 89 68.5
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 2.6e-33 145.2 89 68.5
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 2.6e-33 145.2 89 68.5
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 2.6e-33 145.2 89 68.5
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 2.6e-33 145.2 89 69.7
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 4.5e-33 144.4 89 69.7
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.2e-30 136.3 78 76.9
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 3.5e-30 134.8 80 76.2
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 6.0e-30 134.0 89 64.0
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 3.9e-29 131.3 213 36.6
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 1.1e-28 129.8 74 73.0
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 9.6e-28 126.7 69 79.7
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 5.8e-25 117.5 61 85.2
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 9.9e-25 116.7 65 72.3
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 2.9e-24 115.2 68 73.5
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 5.5e-23 110.9 61 82.0
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.0e-21 106.7 74 62.2
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 2.7e-14 82.0 70 47.1
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 7.9e-14 80.5 70 47.1
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 5.1e-13 77.8 61 59.0
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 1.5e-09 66.2 57 50.9
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 1.4e-07 59.7 39 61.5


User provided reference genes

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