Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 2.2e-258 895.2 478 100.0
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 6.5e-202 707.6 479 82.7
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 7.5e-166 587.8 523 69.2
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.4e-164 583.6 522 68.0
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 9.0e-119 431.4 489 62.4
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.4e-111 407.5 484 53.7
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.5e-105 386.7 493 51.1
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.5e-105 386.7 493 51.1
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 3.2e-100 369.8 446 54.3
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 6.3e-80 302.4 426 52.8
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 6.7e-74 282.3 491 44.6
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.2e-67 261.5 474 43.2
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.4e-66 258.1 480 42.1
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.2e-65 255.0 474 42.6
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 2.6e-65 253.8 489 41.3
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.4e-63 248.1 490 40.2
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.8e-63 247.7 477 42.1
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 5.4e-63 246.1 482 42.1
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.3e-61 241.5 266 59.4
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 8.5e-61 238.8 489 40.9
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 8.0e-59 232.3 485 41.2
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.2e-57 228.4 477 38.8
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-57 227.6 487 40.5
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.0e-57 227.6 488 39.8
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.4e-57 226.9 492 39.0
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.7e-56 224.6 495 40.6
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 2.2e-56 224.2 481 38.7
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 5.4e-55 219.5 479 37.4
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 7.0e-55 219.2 492 39.4
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 5.2e-50 203.0 482 37.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.6e-46 191.4 509 36.7
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.0e-46 191.0 430 39.3
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.6e-46 189.9 606 37.1
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.6e-46 189.9 595 37.1
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 2.3e-45 187.6 155 67.1
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.0e-45 186.4 459 35.3
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 1.5e-44 184.9 599 37.2
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.9e-44 184.5 598 36.8
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 4.3e-44 183.3 504 34.7
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 9.5e-44 182.2 491 35.8
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 9.5e-44 182.2 489 35.4
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.6e-43 180.3 599 36.7
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 6.8e-42 176.0 447 36.9
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 2.2e-40 171.0 495 36.4
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 4.9e-40 169.9 482 33.8
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 4.9e-40 169.9 484 32.2
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.1e-39 168.7 457 34.1
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.9e-39 167.9 496 34.9
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 7.0e-39 166.0 477 36.7
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 2.7e-38 164.1 472 36.7
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 3.5e-38 163.7 499 35.1
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 4.6e-38 163.3 496 33.9
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 4.6e-38 163.3 496 33.9
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 7.8e-38 162.5 479 35.7
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 1.0e-37 162.2 496 33.5
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 3.0e-37 160.6 499 31.7
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 5.0e-37 159.8 155 59.4
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 8.6e-37 159.1 495 37.2
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 1.1e-36 158.7 271 42.1
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.1e-36 158.7 490 34.7
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 3.3e-36 157.1 151 60.3
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 8.1e-35 152.5 486 35.2
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.8e-34 151.4 490 35.9
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.3e-34 151.0 505 35.4
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.3e-34 151.0 480 33.5
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 5.2e-34 149.8 124 63.7
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.5e-33 148.3 145 61.4
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.6e-33 147.5 293 43.7
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 3.4e-33 147.1 320 41.2
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 4.4e-33 146.7 460 33.0
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 9.8e-33 145.6 488 34.0
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.2e-32 144.4 508 32.1
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.9e-32 143.3 145 66.9
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 4.9e-32 143.3 126 60.3
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.3e-32 142.5 135 68.1
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.4e-31 141.7 471 34.8
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 9.2e-31 139.0 492 31.9
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.6e-30 138.3 140 63.6
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 3.5e-30 137.1 285 40.7
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.3e-29 134.4 132 65.9
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 3.0e-29 134.0 464 33.8
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 3.9e-29 133.7 285 35.1
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.9e-29 133.7 134 64.9
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 3.9e-29 133.7 378 32.0
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 6.6e-29 132.9 481 32.0
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 6.6e-29 132.9 147 60.5
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 1.5e-28 131.7 426 33.3
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.5e-28 131.7 283 41.3
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 2.5e-28 131.0 123 56.1
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 2.5e-28 131.0 206 50.5
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.3e-28 130.6 468 29.7
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 4.3e-28 130.2 476 33.6
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 4.3e-28 130.2 467 33.2
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.2e-27 128.6 452 31.4
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.2e-27 128.6 135 63.0
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.2e-27 128.6 468 29.9
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 1.6e-27 128.3 489 34.8
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 2.1e-27 127.9 134 64.9
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 3.6e-27 127.1 133 64.7
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 6.2e-27 126.3 249 41.8
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.4e-26 125.2 442 36.0
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 2.3e-26 124.4 511 29.9
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.0e-26 123.6 289 41.9
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.0e-26 123.6 289 41.9
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.5e-25 121.7 312 34.0
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 5.8e-25 119.8 122 67.2
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.2e-24 117.9 128 60.9
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 8.4e-24 115.9 271 41.0
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.1e-23 115.5 495 32.1
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.1e-23 113.6 467 31.5
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 9.2e-23 112.5 121 56.2
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.2e-22 112.1 121 51.2
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 2.1e-22 111.3 290 39.3
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.7e-22 110.9 121 49.6
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.0e-22 109.8 482 30.1
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 3.9e-21 107.1 452 32.7
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.2e-19 102.1 124 48.4
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.4e-18 98.6 117 45.3
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 2.4e-18 97.8 130 41.5
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 4.0e-18 97.1 165 38.8
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 6.9e-18 96.3 117 47.9
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 6.9e-18 96.3 117 45.3
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 2.6e-17 94.4 376 30.3
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 7.6e-17 92.8 50 84.0
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.7e-14 84.3 107 47.7
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 6.6e-13 79.7 75 60.0
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 1.9e-12 78.2 116 49.1
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 4.8e-11 73.6 164 45.7
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-08 65.5 448 26.3
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 2.2e-08 64.7 135 48.1
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.4e-07 62.0 127 41.7
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 4.2e-07 60.5 453 26.3
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 5.4e-07 60.1 104 31.7
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 9.3e-07 59.3 120 41.7
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.6e-06 58.5 126 40.5
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 2.1e-06 58.2 41 68.3


User provided reference genes

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