Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 0.0e+00 1092.8 584 100.0
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.7e-284 982.2 588 91.5
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 6.3e-284 980.3 593 89.4
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 2.8e-279 964.9 590 89.0
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 2.3e-257 892.1 595 78.5
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 7.3e-256 887.1 591 77.7
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 9.5e-256 886.7 591 78.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.6e-255 885.9 591 77.8
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.4e-254 882.9 593 79.1
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.5e-253 879.4 593 77.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.0e-253 879.0 597 78.4
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 2.0e-253 879.0 583 77.7
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.6e-253 877.1 591 76.0
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.7e-252 875.9 596 76.7
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.4e-251 872.8 593 75.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 7.1e-251 870.5 593 76.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 7.1e-251 870.5 597 76.0
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 9.2e-251 870.2 593 74.9
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.6e-250 867.8 592 75.5
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 7.8e-250 867.1 591 76.0
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.0e-249 866.7 606 77.9
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.7e-249 865.9 593 76.1
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.7e-249 865.9 592 76.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.1e-249 864.4 612 77.9
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.1e-248 863.2 589 76.4
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.3e-248 861.3 595 76.0
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.4e-246 855.5 596 75.2
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 9.9e-245 850.1 607 73.6
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.3e-244 849.7 599 71.8
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.2e-244 849.0 599 71.6
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 8.4e-244 847.0 598 74.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 8.4e-244 847.0 602 76.7
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.4e-243 846.3 593 75.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.9e-243 845.9 594 74.6
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 3.2e-243 845.1 592 74.5
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 7.1e-243 844.0 593 75.7
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.7e-242 842.0 597 75.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.7e-241 839.3 591 73.8
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.3e-241 839.0 591 72.4
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.9e-241 838.2 597 74.0
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 3.9e-241 838.2 599 77.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.9e-240 835.9 599 72.5
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.5e-240 835.5 610 71.1
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.3e-240 835.1 596 74.2
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.3e-240 835.1 599 72.6
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.6e-240 834.3 599 72.5
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 5.6e-240 834.3 595 72.6
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 9.6e-240 833.6 593 74.2
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 9.6e-240 833.6 593 74.2
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.3e-239 833.2 605 72.9
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 3.6e-239 831.6 596 72.8
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 4.8e-239 831.2 605 70.9
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 3.1e-238 828.6 588 72.4
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 3.1e-238 828.6 588 72.4
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 6.9e-238 827.4 596 73.8
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 6.9e-238 827.4 600 72.7
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 1.2e-237 826.6 599 72.1
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 2.0e-237 825.9 596 71.5
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.4e-237 825.1 600 72.0
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.8e-237 824.3 601 72.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 9.9e-237 823.5 599 72.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 9.9e-237 823.5 596 71.6
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 3.8e-236 821.6 595 73.4
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 6.4e-236 820.8 601 72.9
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 6.4e-236 820.8 592 72.8
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 6.4e-236 820.8 592 72.8
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 6.4e-236 820.8 592 72.8
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.4e-236 820.5 599 72.0
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.4e-235 819.7 604 71.2
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.4e-235 819.7 599 71.8
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.2e-235 818.5 593 72.3
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.2e-235 818.5 585 71.8
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.2e-235 818.5 599 71.6
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.2e-235 818.5 597 71.4
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 4.2e-235 818.1 585 71.5
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 9.3e-235 817.0 587 72.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.5e-234 815.1 602 71.4
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.0e-233 813.5 593 71.8
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.0e-233 813.5 591 71.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.3e-233 813.1 596 71.6
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 6.7e-233 810.8 593 71.2
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 6.7e-233 810.8 593 71.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.5e-232 809.7 593 72.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.5e-232 808.9 592 71.3
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.5e-232 808.9 593 71.2
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.3e-232 808.1 600 71.2
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 7.4e-232 807.4 642 70.9
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 9.6e-232 807.0 597 70.2
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.8e-231 805.4 592 69.8
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.7e-231 805.1 588 71.1
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.1e-230 802.0 599 71.5
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-229 800.0 594 71.5
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.2e-229 800.0 589 69.4
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 4.5e-229 798.1 600 73.5
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.8e-229 797.7 592 70.6
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.4e-228 794.3 606 70.3
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 5.5e-227 791.2 595 72.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 9.3e-227 790.4 583 71.0
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.5e-226 788.5 593 72.3
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 4.3e-224 781.6 586 68.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 4.8e-223 778.1 591 71.6
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 8.4e-220 767.3 596 67.8
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 7.1e-219 764.2 596 66.3
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.1e-218 762.7 595 70.6
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 3.5e-218 761.9 600 69.8
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 4.8e-215 751.5 551 71.9
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.4e-214 750.0 554 68.2
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.2e-212 742.7 588 65.1
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.0e-209 732.3 606 64.5
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-207 726.9 599 66.4
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.8e-207 725.7 606 64.0
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.4e-206 722.6 590 68.0
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.2e-203 711.1 600 64.0
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 3.6e-202 708.8 610 63.9
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 3.3e-200 702.2 868 49.4
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.8e-198 696.4 589 65.7
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.7e-196 689.9 594 63.6
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.1e-195 687.2 595 62.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 9.7e-184 647.5 565 61.2
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-181 640.6 474 71.9
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.2e-165 587.4 441 70.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.0e-161 572.4 594 55.4
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.5e-149 532.7 516 60.9
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 6.6e-148 528.5 599 48.7
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 3.6e-146 522.7 592 49.3
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.5e-144 517.3 594 51.5
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 2.2e-135 486.9 596 52.0
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 5.6e-123 445.7 606 43.1
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-121 441.4 583 44.9
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.4e-86 324.7 242 68.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.7e-85 320.5 209 75.1
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.1e-77 294.3 322 50.9
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 8.0e-77 292.4 609 37.4
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 6.5e-63 246.1 574 30.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 2.0e-59 234.6 229 61.1
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.3e-58 229.6 208 59.1
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.1e-46 192.2 151 67.5
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 3.3e-46 190.7 148 63.5
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 4.3e-30 137.1 98 68.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.2e-29 133.3 201 41.8
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.3e-26 125.6 612 25.3
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 9.2e-25 119.4 79 69.6
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 7.8e-24 116.3 79 68.4
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.8e-24 116.3 111 54.1
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 9.9e-19 99.4 114 45.6
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.5e-14 84.7 204 42.6
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 9.9e-11 72.8 59 62.7
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 3.8e-10 70.9 89 43.8


User provided reference genes

Program Settings