Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 7.5e-95 350.5 178 100.0
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 3.2e-85 318.5 178 92.1
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.0e-75 287.0 178 84.3
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 1.5e-71 273.1 178 82.0
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 2.2e-62 242.7 179 72.1
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 1.9e-61 239.6 179 72.6
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 3.5e-60 235.3 178 70.2
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 2.1e-57 226.1 181 67.4
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 9.3e-53 210.7 212 58.0
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 4.3e-50 201.8 183 59.0
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 6.2e-49 198.0 183 58.5
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 1.4e-48 196.8 183 57.9
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 1.3e-46 190.3 183 59.6
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 2.9e-46 189.1 187 53.5
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 2.9e-46 189.1 180 56.7
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 5.5e-45 184.9 179 59.8
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 1.6e-44 183.3 179 58.1
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 2.1e-44 183.0 180 55.6
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 2.7e-44 182.6 178 55.6
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 4.6e-44 181.8 178 53.4
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 7.9e-44 181.0 178 56.2
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 1.8e-43 179.9 182 56.0
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 3.0e-43 179.1 179 57.5
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 3.9e-43 178.7 179 57.5
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 5.1e-43 178.3 182 56.0
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.1e-42 177.2 182 56.0
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.1e-40 170.6 182 53.8
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.8e-40 169.9 160 57.5
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 3.1e-40 169.1 142 59.9
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 5.3e-40 168.3 143 62.9
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 1.5e-39 166.8 103 83.5
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 2.0e-39 166.4 161 56.5
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 3.4e-39 165.6 194 52.1
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 5.8e-39 164.9 163 54.6
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 1.3e-38 163.7 160 56.2
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 2.2e-38 162.9 150 57.3
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 2.2e-38 162.9 181 53.0
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 2.9e-38 162.5 164 54.9
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 2.9e-38 162.5 157 56.1
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 4.9e-38 161.8 160 53.1
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 2.5e-37 159.5 150 58.0
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 2.5e-37 159.5 182 53.3
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 3.2e-37 159.1 150 57.3
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 4.2e-37 158.7 178 51.7
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 5.5e-37 158.3 150 56.7
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 7.1e-37 157.9 187 48.1
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 9.3e-37 157.5 194 50.5
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 1.2e-36 157.1 129 64.3
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 1.2e-36 157.1 150 56.0
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 1.2e-36 157.1 158 56.3
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 3.5e-36 155.6 149 55.0
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 4.6e-36 155.2 129 63.6
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 4.6e-36 155.2 129 63.6
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.3e-35 153.7 144 57.6
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 1.3e-35 153.7 153 57.5
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 2.3e-35 152.9 130 62.3
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 2.3e-35 152.9 129 62.8
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 5.1e-35 151.8 129 62.0
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 5.1e-35 151.8 191 48.7
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 8.7e-35 151.0 168 54.2
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 1.5e-34 150.2 141 58.2
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 2.5e-34 149.4 150 55.3
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 9.7e-34 147.5 146 52.1
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 1.6e-33 146.7 134 61.9
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 2.2e-33 146.4 180 47.8
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 8.2e-33 144.4 144 54.9
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 5.3e-32 141.7 113 63.7
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 1.2e-31 140.6 112 61.6
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 2.0e-31 139.8 159 49.1
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 3.4e-31 139.0 163 49.7
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 3.4e-31 139.0 116 60.3
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 5.9e-31 138.3 136 55.1
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 5.0e-30 135.2 127 56.7
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 5.0e-30 135.2 162 50.6
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 5.0e-30 135.2 112 61.6
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 8.5e-30 134.4 139 51.8
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 1.4e-29 133.7 123 58.5
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 3.2e-29 132.5 164 48.2
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 4.2e-29 132.1 189 43.9
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 9.3e-29 131.0 113 61.1
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 1.6e-28 130.2 102 62.7
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 3.0e-27 125.9 134 53.0
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 1.1e-26 124.0 128 51.6
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 3.3e-26 122.5 166 48.8
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 4.3e-26 122.1 230 38.3
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 5.7e-26 121.7 147 47.6
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 9.7e-26 120.9 132 49.2
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 1.1e-24 117.5 134 52.2
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 6.9e-24 114.8 130 47.7
TPR.G23276 Trifolium pratense HOM05D000033 ORTHO05D007915 1.3e-17 94.0 84 59.5
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 2.4e-16 89.7 59 76.3
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 1.7e-14 83.6 58 69.0
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 2.2e-14 83.2 98 48.0
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.8e-11 73.6 84 47.6
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 5.2e-11 72.0 97 46.4
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 2.6e-10 69.7 68 57.4
Ca_22684_v3 Cicer arietinum L. HOM05D007485 ORTHO05D009437 2.2e-09 66.6 68 60.3
ClCG07G001710 Citrullus lanatus HOM05D007485 ORTHO05D009437 2.4e-08 63.2 101 40.6
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 1.6e-07 60.5 100 43.0


User provided reference genes

Program Settings