Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 9.1e-57 223.4 117 100.0
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 5.7e-51 204.1 117 90.6
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.2e-42 175.6 119 80.7
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.9e-38 162.5 119 77.3
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 5.5e-38 161.0 118 76.3
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 9.5e-38 160.2 118 77.1
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 6.1e-37 157.5 121 75.2
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 5.2e-36 154.5 121 69.4
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 6.8e-36 154.1 121 67.8
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.2e-35 153.3 122 69.7
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 5.7e-35 151.0 123 69.9
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 3.1e-33 145.2 120 65.0
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.6e-32 142.9 120 63.3
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 6.6e-31 137.5 120 61.7
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 6.6e-31 137.5 121 61.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 8.6e-31 137.1 121 62.8
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 8.6e-31 137.1 121 62.8
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 8.6e-31 137.1 121 62.8
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.1e-30 136.7 120 61.7
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 5.6e-30 134.4 119 63.9
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 5.6e-30 134.4 120 62.5
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.2e-29 133.3 117 60.7
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.2e-29 133.3 117 60.7
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 3.6e-29 131.7 119 59.7
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 6.1e-29 131.0 121 62.0
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.0e-28 130.2 122 59.8
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.0e-28 130.2 87 73.6
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.0e-28 130.2 122 57.4
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.8e-28 129.4 116 59.5
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.3e-28 129.0 119 61.3
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 4.0e-28 128.3 115 60.9
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.2e-28 127.9 122 60.7
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.8e-28 127.5 92 68.5
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 6.8e-28 127.5 79 78.5
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.2e-27 126.7 109 64.2
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.2e-27 126.7 117 61.5
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.2e-27 126.7 116 57.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.6e-27 125.6 82 75.6
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.6e-27 125.6 121 59.5
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.6e-27 125.6 116 56.9
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 3.4e-27 125.2 120 60.0
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.4e-27 124.8 108 59.3
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.4e-27 124.8 108 59.3
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 5.8e-27 124.4 120 59.2
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 7.5e-27 124.0 118 58.5
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 7.5e-27 124.0 117 59.8
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 7.5e-27 124.0 117 60.7
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 9.8e-27 123.6 117 60.7
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 9.8e-27 123.6 117 60.7
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 117 60.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.7e-26 122.9 79 74.7
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.7e-26 122.9 120 56.7
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 2.2e-26 122.5 115 60.0
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.2e-26 122.5 120 57.5
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.9e-26 122.1 117 57.3
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 2.9e-26 122.1 89 65.2
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 2.9e-26 122.1 117 58.1
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 3.7e-26 121.7 120 57.5
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.7e-26 121.7 114 57.0
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 4.9e-26 121.3 123 60.2
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 6.4e-26 120.9 117 54.7
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 8.3e-26 120.6 117 53.8
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 8.3e-26 120.6 121 57.9
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.1e-25 120.2 80 71.2
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.4e-25 119.8 107 57.9
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.9e-25 119.4 102 60.8
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 2.4e-25 119.0 79 73.4
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.4e-25 119.0 117 56.4
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 2.4e-25 119.0 118 57.6
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 3.2e-25 118.6 116 53.4
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 4.1e-25 118.2 118 58.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 4.1e-25 118.2 118 58.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 4.1e-25 118.2 118 58.5
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.1e-25 118.2 118 63.6
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 4.1e-25 118.2 114 53.5
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 5.4e-25 117.9 114 57.0
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 5.4e-25 117.9 79 73.4
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 5.4e-25 117.9 79 73.4
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.4e-25 117.9 120 58.3
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 7.0e-25 117.5 115 59.1
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 7.0e-25 117.5 120 56.7
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 9.2e-25 117.1 86 66.3
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 9.2e-25 117.1 84 66.7
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 1.2e-24 116.7 115 54.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 2.0e-24 115.9 118 55.9
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 2.0e-24 115.9 115 58.3
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.7e-24 115.5 79 68.4
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 2.7e-24 115.5 113 60.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.7e-24 115.5 117 58.1
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 6.0e-24 114.4 118 55.9
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 7.8e-24 114.0 66 83.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.0e-23 113.6 117 54.7
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.0e-23 113.6 97 61.9
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.3e-23 113.2 115 57.4
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.3e-23 113.2 79 69.6
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.7e-23 112.8 118 57.6
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.0e-23 112.1 79 68.4
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 3.0e-23 112.1 79 69.6
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 3.0e-23 112.1 79 69.6
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 3.9e-23 111.7 119 52.9
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 3.9e-23 111.7 119 52.9
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 3.9e-23 111.7 119 52.9
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.9e-23 111.7 117 53.8
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 5.0e-23 111.3 128 49.2
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 6.6e-23 110.9 73 71.2
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 6.6e-23 110.9 118 51.7
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 8.6e-23 110.5 118 59.3
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.1e-22 110.2 150 48.7
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.5e-22 109.8 108 53.7
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.5e-22 109.8 120 52.5
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-22 109.0 81 65.4
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 4.3e-22 108.2 97 59.8
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 7.3e-22 107.5 74 68.9
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 9.5e-22 107.1 116 54.3
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-21 106.7 100 58.0
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.1e-21 105.9 116 54.3
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.8e-21 105.5 118 51.7
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.6e-21 105.1 64 75.0
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 8.9e-20 100.5 109 53.2
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.4e-19 98.6 95 53.7
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 3.7e-18 95.1 59 72.9
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.7e-18 95.1 73 63.0
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 4.1e-17 91.7 73 60.3
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 5.4e-17 91.3 65 64.6
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 5.4e-17 91.3 120 46.7
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-16 90.1 64 68.8
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.1e-16 89.4 54 74.1
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.0e-15 87.0 85 49.4
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 3.9e-15 85.1 95 51.6
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.9e-15 85.1 92 52.2
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 5.1e-15 84.7 103 44.7
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 5.1e-15 84.7 93 55.9
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.3e-14 81.6 67 59.7
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.3e-14 81.6 97 47.4
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 5.4e-09 64.7 37 83.8
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 7.1e-09 64.3 110 39.1
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 1.5e-06 56.6 66 43.9


User provided reference genes

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