Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.3e-36 154.5 74 100.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.5e-28 128.3 79 81.0
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 3.3e-28 127.9 80 81.2
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 8.1e-27 123.2 78 80.8
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.1e-26 122.9 80 76.2
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 9.0e-26 119.8 81 76.5
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.2e-25 119.4 76 81.6
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 1.5e-25 119.0 80 75.0
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 2.6e-25 118.2 80 75.0
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.6e-22 109.0 80 71.2
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 7.8e-22 106.7 80 66.2
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 1.7e-21 105.5 78 71.8
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.3e-21 105.1 78 71.8
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.5e-20 102.4 77 64.9
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.9e-20 102.1 77 66.2
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.3e-20 100.9 79 64.6
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 2.8e-19 98.2 82 59.8
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 8.1e-19 96.7 59 72.9
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 8.1e-19 96.7 59 72.9
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 3.1e-18 94.7 83 59.0
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.2e-17 92.8 84 58.3
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.1e-15 86.3 68 57.4
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 4.2e-15 84.3 82 53.7
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 4.2e-15 84.3 80 50.0
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.1e-14 82.0 80 53.8
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 2.1e-14 82.0 70 55.7
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-14 81.6 78 56.4
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-14 81.6 78 56.4
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 3.5e-14 81.3 77 50.6
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.0e-14 80.5 84 52.4
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 7.9e-14 80.1 77 48.1
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 7.9e-14 80.1 77 48.1
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.0e-13 79.7 51 70.6
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.3e-13 78.6 80 52.5
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.0e-13 78.2 77 46.8
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.9e-13 77.8 80 50.0
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.7e-13 77.0 77 45.5
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 6.7e-13 77.0 74 54.1
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 6.7e-13 77.0 76 48.7
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 8.7e-13 76.6 72 48.6
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.1e-12 76.3 76 52.6
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.3e-12 74.7 69 60.9
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.3e-12 74.7 69 60.9
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.6e-12 73.9 74 52.7
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 7.4e-12 73.6 83 45.8
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.3e-11 72.8 74 52.7
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.6e-11 72.4 74 51.4
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.6e-11 72.4 74 51.4
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.8e-11 71.6 83 49.4
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.8e-11 71.6 52 63.5
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.7e-11 71.2 71 57.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 4.8e-11 70.9 78 46.2
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 4.8e-11 70.9 73 53.4
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.2e-11 70.5 79 45.6
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.1e-10 69.7 84 45.2
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.1e-10 69.7 81 44.4
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.1e-10 69.7 79 50.6
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-10 69.3 85 45.9
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-10 69.3 84 46.4
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 1.8e-10 68.9 76 48.7
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.8e-10 68.9 75 48.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.8e-10 68.9 75 48.0
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 2.4e-10 68.6 71 49.3
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.1e-10 68.2 75 44.0
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.3e-10 67.4 70 51.4
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 6.9e-10 67.0 83 47.0
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 9.0e-10 66.6 77 48.1
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.5e-09 65.9 71 50.7
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.5e-09 65.9 74 48.6
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.6e-09 65.1 77 48.1
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 2.6e-09 65.1 78 42.3
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.6e-09 65.1 43 58.1
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 4.5e-09 64.3 82 46.3
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.0e-08 63.2 79 44.3
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.0e-08 63.2 71 47.9
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.0e-08 63.2 42 69.0
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.0e-08 63.2 55 49.1
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 1.3e-08 62.8 59 50.8
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.3e-08 62.8 42 66.7
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.7e-08 62.4 80 42.5
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.7e-08 62.4 66 54.5
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.2e-08 62.0 79 40.5
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 2.2e-08 62.0 55 56.4
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.9e-08 61.6 54 51.9
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 3.8e-08 61.2 56 51.8
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 3.8e-08 61.2 67 49.3
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 3.8e-08 61.2 43 58.1
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.8e-08 61.2 42 57.1
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 6.5e-08 60.5 46 58.7
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 8.4e-08 60.1 67 49.3
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 8.4e-08 60.1 73 49.3
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 1.1e-07 59.7 80 43.8
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.4e-07 59.3 70 48.6
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.9e-07 58.9 44 59.1
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 2.5e-07 58.5 87 41.4
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 4.2e-07 57.8 75 44.0
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 7.1e-07 57.0 74 41.9
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 9.3e-07 56.6 65 43.1
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.2e-06 56.2 82 39.0
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 2.7e-06 55.1 47 48.9
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 4.6e-06 54.3 73 47.9
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 6.0e-06 53.9 67 38.8


User provided reference genes

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