Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 5.8e-101 370.9 193 100.0
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 5.1e-81 304.7 185 84.3
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 3.8e-76 288.5 184 81.5
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 8.5e-68 260.8 184 72.3
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 5.5e-67 258.1 184 72.3
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 2.2e-63 246.1 185 69.7
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 2.8e-63 245.7 149 86.6
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.8e-62 243.0 185 68.6
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 3.5e-61 238.8 185 68.1
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.0e-60 237.3 184 65.2
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 5.5e-59 231.5 223 58.3
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 2.3e-57 226.1 184 64.1
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 5.7e-56 221.5 184 60.9
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 9.7e-56 220.7 186 60.8
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.3e-55 218.0 124 92.7
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.4e-54 216.9 193 57.5
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 9.1e-54 214.2 184 59.2
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.7e-53 211.1 184 58.7
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 1.0e-52 210.7 184 57.6
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 1.7e-52 209.9 187 59.4
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 2.2e-52 209.5 184 58.7
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 2.9e-52 209.1 185 60.5
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 6.5e-52 208.0 184 57.6
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 8.5e-52 207.6 184 58.7
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.5e-51 206.8 186 57.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.9e-51 206.5 187 57.8
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 3.2e-51 205.7 184 54.3
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 9.4e-51 204.1 185 60.0
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.1e-50 203.0 185 57.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.6e-50 202.2 184 53.8
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 3.6e-50 202.2 185 57.3
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 6.1e-50 201.4 185 56.8
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 6.1e-50 201.4 184 57.1
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.8e-49 199.9 185 59.5
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 1.2e-48 197.2 184 51.6
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 2.0e-48 196.4 190 55.8
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 2.6e-48 196.1 190 49.5
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 2.6e-48 196.1 186 54.8
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 3.4e-48 195.7 184 55.4
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 3.4e-48 195.7 185 55.7
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 3.4e-48 195.7 184 52.7
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 3.4e-48 195.7 184 56.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 5.7e-48 194.9 185 56.2
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 5.7e-48 194.9 185 57.3
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 9.7e-48 194.1 185 54.6
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.3e-47 193.7 185 54.6
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 1.3e-47 193.7 185 54.6
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.7e-47 192.2 190 48.9
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 4.8e-47 191.8 199 53.3
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.4e-46 190.3 184 50.5
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.4e-46 190.3 195 54.4
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.8e-46 189.9 167 59.3
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 2.4e-46 189.5 181 54.1
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.1e-46 189.1 189 53.4
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 4.1e-46 188.7 186 54.3
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 9.1e-46 187.6 188 54.3
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 1.0e-44 184.1 185 54.1
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.0e-44 184.1 185 53.5
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.0e-44 184.1 185 53.5
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.9e-44 182.6 233 45.9
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.5e-43 180.3 186 52.2
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 5.5e-43 178.3 184 52.2
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 7.2e-43 177.9 162 57.4
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.0e-41 174.1 186 49.5
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.4e-41 173.7 187 51.9
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 2.3e-41 172.9 187 52.4
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.0e-41 172.2 187 51.9
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.2e-41 171.8 184 51.1
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.0e-40 169.9 184 48.9
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.0e-40 169.9 184 46.7
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 2.6e-40 169.5 184 48.4
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 5.7e-40 168.3 184 47.3
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 9.8e-40 167.5 184 48.9
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 3.7e-39 165.6 184 47.8
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 2.4e-38 162.9 184 51.1
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 7.0e-38 161.4 158 52.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.2e-37 160.6 174 48.9
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.2e-37 160.6 183 49.2
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.7e-37 159.5 184 45.1
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.5e-37 159.1 183 48.6
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 7.7e-37 157.9 141 59.6
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.8e-36 155.6 184 41.3
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 3.8e-36 155.6 192 42.7
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 6.6e-36 154.8 166 50.6
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 1.1e-35 154.1 184 41.8
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 2.5e-35 152.9 184 42.9
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.5e-35 152.9 184 41.8
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 2.5e-35 152.9 184 44.6
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 1.2e-34 150.6 184 43.5
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 2.8e-34 149.4 184 41.8
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 2.8e-34 149.4 184 40.8
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 6.1e-34 148.3 168 48.8
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.8e-33 146.7 184 40.8
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 3.4e-32 142.5 181 43.6
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 5.7e-32 141.7 191 42.9
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 2.2e-31 139.8 187 43.9
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.0e-29 133.3 129 50.4
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.0e-28 131.0 126 57.1
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 1.1e-27 127.5 184 38.0
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 4.3e-27 125.6 156 43.6
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.4e-25 120.6 181 34.8
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 2.6e-24 116.3 184 35.9
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 3.4e-24 115.9 106 63.2
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 5.8e-24 115.2 107 48.6
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.7e-23 113.6 185 37.8
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.0e-22 108.2 151 41.7
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.0e-20 104.4 84 58.3
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.7e-20 103.6 145 40.0
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 2.3e-20 103.2 128 46.1
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 1.5e-19 100.5 125 43.2
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.5e-19 99.8 117 52.1
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.3e-19 99.4 183 32.2
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 9.5e-19 97.8 102 56.9
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.1e-17 94.4 88 61.4
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 7.5e-16 88.2 45 93.3
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 2.9e-15 86.3 80 55.0
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 6.4e-15 85.1 84 48.8
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 1.9e-11 73.6 61 55.7
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 9.5e-11 71.2 93 41.9
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.2e-10 70.9 141 31.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 4.7e-10 68.9 114 36.0
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 2.3e-09 66.6 180 25.0
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 1.9e-06 57.0 57 52.6


User provided reference genes

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