Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 6.1e-247 857.1 438 100.0
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.8e-225 784.6 438 92.0
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 2.0e-218 762.3 442 90.0
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.2e-196 689.1 440 80.0
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 1.9e-195 686.0 459 77.3
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 4.6e-186 654.8 445 78.4
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 5.1e-185 651.4 443 77.7
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 4.0e-182 641.7 443 76.7
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.2e-181 640.2 444 78.6
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 2.2e-180 636.0 443 74.9
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 4.9e-180 634.8 445 77.8
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.3e-167 593.6 395 77.5
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 2.5e-160 569.3 322 90.7
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 5.3e-150 535.0 497 61.6
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 8.7e-145 517.7 497 58.8
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.5e-144 516.9 499 59.7
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 2.2e-135 486.5 360 73.6
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 3.1e-134 482.6 483 57.3
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 6.9e-134 481.5 488 57.4
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 3.4e-133 479.2 498 58.4
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.7e-132 476.9 489 56.0
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.1e-130 469.9 487 56.7
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 6.1e-130 468.4 469 57.4
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 2.3e-129 466.5 458 57.0
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 8.8e-129 464.5 491 55.6
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 4.4e-128 462.2 486 53.5
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 5.7e-128 461.8 477 54.5
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 5.7e-128 461.8 481 57.4
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.3e-127 460.7 501 56.1
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.3e-127 460.7 477 56.0
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 1.7e-127 460.3 490 55.9
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.7e-127 460.3 486 56.4
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 6.3e-127 458.4 477 56.6
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 6.3e-127 458.4 497 54.3
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.1e-126 457.6 487 55.0
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.8e-126 456.8 501 54.9
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.0e-124 451.1 491 51.9
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 5.0e-124 448.7 490 52.2
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 5.0e-124 448.7 474 56.3
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 4.2e-123 445.7 477 56.0
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 2.7e-122 443.0 393 62.1
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 3.0e-121 439.5 450 57.6
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 5.2e-121 438.7 474 55.3
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.2e-121 438.7 474 55.3
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.2e-121 438.7 474 55.3
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.2e-121 438.7 474 55.3
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.6e-120 436.4 523 52.6
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.3e-120 436.0 501 52.7
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 7.4e-120 434.9 499 52.1
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 4.8e-119 432.2 472 54.9
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.8e-118 430.3 474 54.6
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 4.1e-118 429.1 383 61.4
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.9e-117 425.2 444 56.8
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.3e-116 424.1 489 53.6
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 3.8e-116 422.5 445 54.4
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 3.8e-116 422.5 506 53.2
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 8.5e-116 421.4 444 54.3
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.2e-115 419.5 501 51.5
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.0e-113 412.9 372 61.0
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.2e-111 406.8 496 50.4
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 4.8e-111 405.6 420 55.7
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 8.3e-111 404.8 517 50.3
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 5.3e-110 402.1 383 59.0
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 9.1e-110 401.4 451 56.3
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 2.7e-109 399.8 436 52.3
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.2e-108 396.7 501 49.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.6e-106 390.6 518 49.2
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 2.1e-106 390.2 515 48.3
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 2.6e-104 383.3 503 49.3
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 2.8e-103 379.8 479 50.1
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.1e-102 377.9 469 52.7
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 7.7e-101 371.7 592 43.2
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 7.7e-101 371.7 480 50.4
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.3e-100 370.9 385 55.6
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.3e-100 370.9 400 54.5
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 5.0e-100 369.0 432 54.2
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 4.2e-99 365.9 439 51.9
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 4.0e-97 359.4 490 49.8
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 4.0e-97 359.4 451 49.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.0e-96 357.1 455 48.4
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 3.7e-95 352.8 469 48.2
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.5e-91 340.9 446 47.8
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.6e-90 337.4 400 54.2
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 2.8e-90 336.7 208 84.6
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.0e-88 330.5 384 51.0
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 4.4e-88 329.3 441 47.4
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 4.4e-88 329.3 383 50.4
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 5.8e-88 328.9 430 48.4
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.7e-84 317.4 440 46.4
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 7.3e-83 312.0 443 46.5
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 1.2e-82 311.2 480 44.0
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 8.1e-82 308.5 447 46.1
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.1e-81 308.1 406 45.1
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 2.3e-81 307.0 501 42.7
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 3.1e-81 306.6 443 46.3
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 3.1e-81 306.6 406 50.2
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 3.1e-81 306.6 316 55.4
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 8.9e-81 305.1 441 46.0
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.6e-77 294.3 368 50.8
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 2.7e-77 293.5 425 44.5
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 7.8e-77 292.0 445 43.8
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.7e-76 290.8 384 49.5
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.9e-75 287.3 449 45.4
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.6e-75 285.8 443 41.5
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 3.6e-74 283.1 308 53.2
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 1.8e-73 280.8 440 45.0
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 5.2e-73 279.3 435 44.1
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 6.8e-73 278.9 435 44.1
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 7.6e-72 275.4 381 48.6
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.2e-69 268.1 453 44.8
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 5.1e-68 262.7 385 47.8
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 2.5e-67 260.4 435 45.1
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 7.3e-67 258.8 370 45.4
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.2e-64 251.5 441 45.8
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 5.8e-64 249.2 415 43.1
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.4e-62 244.6 468 39.7
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 4.2e-62 243.0 445 40.2
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.1e-57 228.4 258 53.9
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.1e-57 226.9 383 41.3
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 4.9e-55 219.5 389 39.6
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.9e-54 217.6 457 39.8
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 4.2e-54 216.5 233 52.4
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 9.3e-54 215.3 345 43.5
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 1.8e-49 201.1 220 49.5
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 6.2e-42 176.0 245 42.4
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 6.9e-41 172.6 108 76.9
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.5e-37 160.2 342 35.1
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 9.0e-33 145.6 352 34.9
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 4.2e-30 136.7 208 40.4
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.7e-29 134.0 222 36.9
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.7e-26 123.6 271 33.2
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 1.2e-24 118.6 334 33.5
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.3e-23 115.2 112 44.6
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 5.0e-23 113.2 208 42.3
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.0e-23 113.2 442 29.0
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.1e-22 112.1 123 48.8
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 6.7e-20 102.8 68 73.5
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.6e-13 81.6 148 37.8
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 1.9e-06 58.2 76 53.9
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 2.5e-06 57.8 52 63.5


User provided reference genes

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