Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 7.5e-273 943.3 510 100.0
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.4e-258 896.0 510 91.6
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 8.9e-258 893.3 510 91.2
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 5.4e-255 884.0 510 89.2
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 3.5e-254 881.3 510 92.0
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 92.5
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 1.3e-253 879.4 510 92.4
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 90.4
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 2.5e-252 875.2 510 89.2
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 1.4e-250 869.4 511 88.6
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 2.3e-250 868.6 510 87.3
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 5.8e-249 864.0 512 90.0
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 2.2e-248 862.1 510 87.6
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 2.2e-248 862.1 510 87.3
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 8.4e-248 860.1 510 87.1
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 8.4e-248 860.1 510 87.1
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.9e-247 859.0 509 88.4
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 87.6
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 86.9
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 3.2e-247 858.2 511 86.9
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 5.4e-247 857.4 510 86.5
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 1.6e-246 855.9 510 86.1
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 88.8
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 4.6e-246 854.4 511 87.1
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 4.6e-246 854.4 512 88.9
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 7.8e-246 853.6 510 86.1
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.3e-245 852.8 510 87.5
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.3e-245 852.8 511 86.9
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.3e-245 852.8 510 86.1
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.7e-245 852.4 510 86.3
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 3.0e-245 851.7 510 86.1
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 5.1e-245 850.9 511 86.7
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 2.5e-244 848.6 511 85.1
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 3.3e-244 848.2 511 85.7
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 4.3e-244 847.8 510 84.7
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 4.3e-244 847.8 510 84.9
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.2e-243 846.3 510 84.7
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.6e-243 845.9 510 85.7
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.8e-243 845.1 511 86.3
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 2.8e-243 845.1 510 85.1
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 4.7e-243 844.3 510 84.1
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.2e-243 844.0 512 85.4
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 6.2e-243 844.0 510 84.5
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.1e-242 843.2 510 84.5
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.1e-242 843.2 510 85.5
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 1.8e-242 842.4 510 84.5
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 1.8e-242 842.4 511 86.1
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 2.4e-242 842.0 527 84.3
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 2.4e-242 842.0 510 84.5
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 2.4e-242 842.0 510 84.5
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 3.1e-242 841.6 510 84.1
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 3.1e-242 841.6 510 84.7
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 4.0e-242 841.3 510 87.1
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 5.2e-242 840.9 510 83.5
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 5.2e-242 840.9 494 91.7
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 8.9e-242 840.1 510 83.7
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.2e-241 839.7 510 83.3
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 1.5e-241 839.3 510 85.1
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.0e-241 839.0 511 83.6
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 2.0e-241 839.0 510 84.9
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 3.4e-241 838.2 510 83.3
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 83.3
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 83.3
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.7e-240 835.9 510 83.9
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.2e-240 835.5 510 83.9
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 2.9e-240 835.1 510 84.7
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 6.4e-240 833.9 510 82.7
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.9e-239 832.4 510 82.5
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.9e-239 832.4 510 82.9
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 2.4e-239 832.0 510 83.1
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 7.1e-239 830.5 510 82.9
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.2e-238 829.7 510 82.9
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.6e-238 829.3 510 82.5
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.7e-237 825.9 510 82.0
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 2.3e-237 825.5 510 82.0
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 2.3e-237 825.5 510 82.0
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 3.0e-237 825.1 510 81.8
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 3.9e-237 824.7 510 81.8
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 5.1e-237 824.3 510 83.1
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 1.9e-236 822.4 511 82.8
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 1.9e-236 822.4 510 82.5
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 4.3e-236 821.2 510 83.3
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 5.6e-236 820.8 510 81.6
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 1.6e-235 819.3 510 82.2
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.6e-235 819.3 510 83.3
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 2.1e-235 818.9 510 82.0
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 2.8e-235 818.5 510 82.0
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 4.8e-235 817.8 511 82.8
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 6.2e-235 817.4 510 81.8
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 1.8e-234 815.8 510 83.9
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 1.8e-234 815.8 510 83.9
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.8e-234 815.8 510 82.9
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 2.4e-234 815.5 510 83.7
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 2.4e-234 815.5 522 80.7
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 2.4e-234 815.5 549 78.3
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 3.1e-234 815.1 502 83.9
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 5.3e-234 814.3 510 83.7
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 5.3e-234 814.3 510 81.0
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 6.9e-234 813.9 510 82.5
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.9e-234 813.9 510 82.5
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.9e-234 813.9 510 82.5
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 7.1e-231 803.9 511 81.4
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 7.1e-231 803.9 511 82.2
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 9.3e-231 803.5 511 81.8
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 9.3e-231 803.5 510 80.8
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.6e-230 802.7 510 81.4
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 4.6e-230 801.2 512 85.0
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.8e-229 799.3 505 83.2
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 3.0e-229 798.5 510 84.9
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 8.7e-229 797.0 511 80.2
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.1e-228 796.6 510 79.6
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.5e-228 796.2 494 84.2
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 3.3e-228 795.0 494 82.4
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 6.9e-226 787.3 510 80.4
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 9.0e-226 786.9 494 81.6
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 3.4e-225 785.0 511 79.5
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 3.4e-225 785.0 556 75.9
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.8e-225 784.3 524 79.8
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.8e-225 784.3 524 79.8
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 1.7e-224 782.7 473 84.1
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.8e-224 781.6 494 82.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 1.6e-222 776.2 472 85.2
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.1e-220 770.0 547 74.4
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 2.5e-220 768.8 510 79.0
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 1.1e-218 763.5 510 77.6
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 5.8e-217 757.7 511 76.5
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 1.1e-212 743.4 509 76.4
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.1e-211 739.2 512 76.0
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 2.4e-202 709.1 440 81.8
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.7e-200 703.0 413 88.6
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 1.7e-195 686.4 511 72.6
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.1e-194 683.7 472 78.2
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.5e-192 674.5 510 71.6
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 1.1e-191 673.7 503 72.0
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 7.0e-186 654.4 514 64.6
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 1.8e-178 629.8 364 92.3
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.3e-176 623.6 503 65.4
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 1.5e-175 620.2 375 84.8
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 1.3e-168 597.0 468 67.9
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.1e-167 594.0 514 59.1
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 1.4e-165 587.0 520 61.5
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 7.5e-164 581.3 511 60.1
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.4e-162 577.0 494 59.1
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 1.6e-158 563.5 365 79.7
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 2.0e-156 556.6 382 75.7
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 3.7e-155 552.4 504 62.3
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 5.2e-149 531.9 499 53.7
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.2e-148 530.8 325 86.8
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.9e-147 526.2 347 79.3
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 1.0e-144 517.7 307 89.9
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.1e-137 493.4 457 63.0
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.6e-128 461.8 284 85.2
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 5.2e-125 452.2 381 60.6
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.9e-122 443.7 254 87.4
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 1.1e-109 401.4 513 45.6
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 3.4e-108 396.4 486 45.3
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.7e-104 382.1 386 53.9
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.6e-103 379.0 237 84.4
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 9.7e-95 351.7 285 67.4
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 6.9e-93 345.5 519 38.0
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.1e-74 285.0 199 77.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.0e-71 274.2 343 47.5
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 1.3e-70 271.6 503 39.8
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 2.5e-58 230.7 150 80.0
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.0e-56 225.3 312 43.6
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.6e-55 220.7 365 40.3
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 2.2e-46 191.0 117 78.6
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.5e-44 183.3 206 51.5
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.3e-42 177.2 199 51.3
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 4.6e-36 156.8 143 62.9
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 8.6e-35 152.5 106 75.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.4e-31 140.6 119 58.8
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 1.3e-27 128.6 82 84.1
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 2.9e-22 110.9 156 46.8
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 2.5e-10 71.2 39 87.2
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 1.6e-09 68.6 56 58.9
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 3.6e-09 67.4 37 86.5


User provided reference genes

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