Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1744.6 877 100.0
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1458.4 879 85.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1454.5 879 84.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 0.0e+00 1353.2 876 78.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 0.0e+00 1315.4 881 77.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 0.0e+00 1276.2 881 74.1
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 0.0e+00 1244.2 880 73.5
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 0.0e+00 1231.5 879 72.8
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1223.4 858 72.8
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1217.6 869 72.2
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1144.8 875 69.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 0.0e+00 1116.7 877 67.8
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.6e-307 1059.3 851 66.9
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 4.6e-286 988.0 882 59.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.9e-279 966.1 882 57.6
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 7.8e-278 960.7 883 57.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 6.2e-275 951.0 886 56.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 4.4e-273 944.9 882 56.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.0e-261 907.1 881 55.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 5.6e-260 901.4 880 56.4
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.2e-259 897.9 881 55.4
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-258 897.1 879 54.8
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-257 893.6 879 54.3
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.8e-257 891.3 887 54.6
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.7e-256 889.8 883 54.5
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.9e-256 889.0 887 54.6
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 4.9e-256 888.3 885 55.4
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 8.4e-256 887.5 887 54.1
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-255 887.1 883 54.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.4e-255 886.7 881 54.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.9e-255 886.3 858 55.7
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 4.2e-255 885.2 884 54.9
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 7.4e-252 874.4 884 52.6
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.8e-250 869.8 881 53.0
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 5.3e-250 868.2 877 52.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.4e-249 865.5 885 52.9
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 9.3e-247 857.4 883 53.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-245 853.6 883 52.9
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.1e-244 850.5 887 52.2
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.3e-243 847.0 886 51.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.5e-241 840.1 918 50.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.5e-240 834.7 884 52.0
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.6e-238 830.1 870 51.5
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 3.5e-238 828.9 836 53.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.3e-237 826.2 889 49.7
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.1e-236 823.9 939 50.4
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 4.3e-236 822.0 750 58.5
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.6e-235 820.1 918 50.9
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.1e-234 815.8 856 53.2
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.7e-232 810.1 881 49.1
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.8e-232 808.9 899 50.2
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.7e-230 802.7 882 49.9
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 6.1e-230 801.6 883 51.2
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.3e-229 799.7 885 48.9
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 9.7e-228 794.3 747 57.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.4e-226 790.4 887 48.9
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.4e-226 789.6 882 49.5
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 5.3e-226 788.5 887 49.0
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.7e-224 783.5 949 48.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.4e-223 780.4 885 47.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 6.7e-221 771.5 888 47.7
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 2.0e-220 770.0 904 48.3
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.3e-220 769.2 886 47.7
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.6e-217 759.6 884 48.3
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-215 754.2 884 47.2
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.5e-215 753.8 861 49.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 7.2e-215 751.5 885 46.9
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 9.4e-215 751.1 731 55.1
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.1e-214 750.0 887 47.0
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 6.1e-214 748.4 881 47.8
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 7.0e-210 734.9 893 46.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 7.0e-210 734.9 889 45.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.2e-209 734.2 889 46.7
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 5.5e-207 725.3 885 45.9
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 7.2e-207 724.9 886 46.2
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 9.4e-207 724.5 889 46.3
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-206 723.0 889 46.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 6.1e-206 721.8 889 46.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.4e-205 720.7 888 45.0
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.2e-205 718.8 882 46.5
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.8e-203 712.2 882 46.4
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.5e-199 699.9 882 45.6
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.5e-199 699.9 698 53.9
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 4.7e-198 695.7 890 43.3
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.4e-197 694.1 955 44.0
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.7e-195 686.0 909 44.0
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 5.9e-193 678.7 728 51.5
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.5e-191 671.4 887 44.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.4e-189 667.5 894 43.5
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 8.9e-189 664.8 936 42.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 3.7e-187 659.4 696 52.0
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.4e-186 657.5 806 47.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.2e-185 654.4 654 54.7
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 7.3e-183 645.2 888 43.6
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 7.3e-183 645.2 898 42.8
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 7.3e-183 645.2 895 42.9
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.6e-177 625.9 833 43.6
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 5.0e-176 622.5 713 50.4
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 3.7e-171 606.3 664 49.5
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 6.0e-169 599.0 625 50.6
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 4.3e-167 592.8 699 49.4
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.5e-164 584.3 889 40.0
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.6e-158 564.3 885 39.0
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.5e-151 540.4 905 39.4
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.4e-141 507.3 814 40.8
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.0e-141 505.4 640 44.8
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 9.0e-141 505.4 697 42.2
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.0e-136 490.3 552 50.0
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.9e-130 471.1 636 43.1
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 8.2e-126 455.7 778 36.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 8.2e-126 455.7 884 35.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 4.5e-124 449.9 753 37.8
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 4.2e-122 443.4 687 37.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.4e-119 432.6 546 44.1
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.7e-111 405.6 354 64.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 4.2e-106 390.2 751 36.9
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.8e-94 350.9 203 88.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.1e-93 347.4 262 67.9
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.7e-89 333.6 960 29.5
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.7e-89 333.6 960 29.5
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 8.0e-89 332.8 565 38.8
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-84 318.9 233 69.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.8e-83 313.9 600 35.3
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.5e-83 312.8 288 60.4
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 5.5e-82 310.1 954 27.9
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.4e-82 309.3 240 66.2
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 2.8e-73 281.2 739 31.4
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 6.1e-73 280.0 514 34.2
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.4e-71 274.2 280 53.9
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 7.8e-68 263.1 209 61.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-66 258.8 194 67.0
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.1e-61 240.7 766 27.7
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.4e-55 220.7 346 35.8
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.8e-48 198.7 193 53.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.2e-47 196.1 183 55.7
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.5e-47 195.7 143 68.5
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 3.8e-46 191.0 213 49.8
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.1e-45 187.6 322 35.1
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.1e-42 179.5 197 48.2
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.3e-42 177.6 200 46.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 8.1e-41 173.3 145 62.1
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.2e-40 170.6 236 40.3
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.4e-38 163.7 165 54.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 5.4e-37 160.6 189 45.0
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.6e-36 157.5 221 39.8
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.7e-35 155.6 237 39.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.9e-34 152.1 212 38.7
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 4.3e-34 151.0 97 76.3
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 9.6e-34 149.8 109 66.1
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.3e-33 149.4 96 76.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.9e-30 138.3 95 75.8
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 2.3e-27 128.6 84 79.8
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.8e-25 121.7 187 38.0
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.4e-24 118.6 170 48.2
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.0e-24 116.7 276 29.7
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 6.4e-22 110.5 103 58.3
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.2e-20 106.3 172 37.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 7.9e-20 103.6 195 32.8
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 4.8e-17 94.4 181 32.0
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 6.5e-14 84.0 51 82.4
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.1e-13 80.5 108 44.4
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 1.1e-08 66.6 105 38.1
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.5e-07 61.2 87 36.8
Psat7g011720 Pisum sativum HOM05D000081 ORTHO05D004978 5.9e-07 60.8 38 71.1
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.5e-06 57.4 179 25.7


User provided reference genes

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