Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 2.0e-166 589.0 288 100.0
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 8.6e-141 503.8 289 86.9
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 3.1e-138 495.4 270 91.1
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 2.7e-118 429.1 298 73.5
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 8.1e-115 417.5 327 69.1
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 4.6e-110 401.7 316 70.9
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 3.6e-107 392.1 312 67.3
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 8.1e-107 391.0 312 67.3
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 1.4e-98 363.6 295 68.1
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 3.8e-96 355.5 294 64.3
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 6.0e-94 348.2 305 63.3
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 1.8e-93 346.7 310 61.0
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 2.5e-92 342.8 299 61.2
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 1.6e-91 340.1 291 62.9
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 2.0e-89 333.2 300 61.0
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 5.8e-89 331.6 308 59.4
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 1.7e-88 330.1 303 59.7
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 1.9e-87 326.6 305 60.7
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 2.1e-86 323.2 311 57.2
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 4.6e-86 322.0 308 59.4
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 2.3e-85 319.7 311 59.5
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 2.3e-85 319.7 304 61.2
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 2.3e-85 319.7 310 59.7
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 2.3e-85 319.7 307 58.0
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.1e-84 317.4 304 60.2
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 1.9e-84 316.6 301 59.8
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 2.5e-84 316.2 291 58.8
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 9.6e-84 314.3 302 59.3
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 9.6e-84 314.3 303 59.1
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 1.3e-83 313.9 291 58.8
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.1e-83 313.2 291 58.4
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 6.3e-83 311.6 291 58.1
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 3.1e-82 309.3 288 60.8
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 3.1e-82 309.3 296 58.8
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 4.1e-82 308.9 294 61.2
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 4.1e-82 308.9 285 58.6
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 4.1e-82 308.9 285 58.6
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 9.0e-82 307.8 280 61.1
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 3.4e-81 305.8 297 57.9
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 5.9e-81 305.1 339 54.6
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 1.0e-80 304.3 291 57.0
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 1.1e-79 300.8 336 53.9
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 7.2e-79 298.1 296 54.7
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 2.1e-78 296.6 289 57.8
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 2.1e-78 296.6 294 56.1
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 6.1e-78 295.0 299 55.9
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 1.3e-77 293.9 296 56.8
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 1.8e-77 293.5 319 53.6
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 1.9e-76 290.0 300 53.3
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 2.5e-76 289.7 304 52.6
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 3.3e-76 289.3 287 58.5
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 5.7e-76 288.5 305 52.8
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-75 287.0 268 58.2
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 3.7e-75 285.8 290 54.5
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 6.3e-75 285.0 303 52.1
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 8.2e-75 284.6 304 53.6
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 9.0e-74 281.2 294 52.4
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 2.0e-73 280.0 286 54.2
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 2.6e-73 279.6 293 53.2
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 2.6e-73 279.6 292 53.8
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 4.5e-73 278.9 303 53.1
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 7.7e-73 278.1 293 53.2
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 1.0e-72 277.7 292 52.7
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 2.9e-72 276.2 309 52.1
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 3.8e-72 275.8 299 51.8
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 7.2e-71 271.6 348 46.6
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 1.2e-70 270.8 276 56.5
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 6.1e-70 268.5 292 53.8
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 1.0e-69 267.7 276 55.1
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 1.0e-69 267.7 295 52.5
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.4e-69 267.3 290 52.8
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 1.8e-69 266.9 289 54.3
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 1.8e-69 266.9 283 55.1
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 2.3e-69 266.5 300 51.7
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 1.5e-68 263.8 351 45.6
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 7.4e-68 261.5 279 56.3
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 9.7e-68 261.2 364 44.5
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 4.1e-66 255.8 297 52.9
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 5.3e-66 255.4 290 52.4
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 7.7e-65 251.5 233 55.8
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 6.5e-64 248.4 393 40.5
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 6.5e-64 248.4 310 49.0
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 4.2e-63 245.7 296 49.3
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 7.2e-63 245.0 276 52.9
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 1.1e-58 231.1 287 47.0
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 7.7e-57 224.9 294 46.9
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 5.0e-56 222.2 129 82.9
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 5.0e-56 222.2 320 46.9
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 4.2e-55 219.2 246 51.6
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 1.6e-54 217.2 275 48.0
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 8.8e-53 211.5 273 44.7
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 7.5e-52 208.4 109 84.4
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 3.7e-51 206.1 207 58.0
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 4.5e-49 199.1 109 83.5
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 2.9e-48 196.4 109 81.7
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 1.0e-45 188.0 142 63.4
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 3.4e-44 183.0 98 83.7
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 7.0e-42 175.3 205 45.4
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 7.7e-41 171.8 98 80.6
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.0e-40 171.4 98 80.6
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 4.2e-39 166.0 167 52.7
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 7.2e-39 165.2 88 84.1
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 4.0e-37 159.5 210 49.0
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 3.1e-34 149.8 127 63.0
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 9.2e-34 148.3 98 69.4
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 3.5e-33 146.4 98 71.4
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 3.8e-32 142.9 241 42.3
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 1.7e-27 127.5 220 38.6
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 9.5e-23 111.7 205 39.0
VMungo1309G0027 Vigna mungo HOM05D006626 ORTHO05D007352 4.0e-21 106.3 79 72.2
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.3e-15 86.3 184 34.8
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 2.8e-14 83.6 113 48.7
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 1.8e-13 80.9 113 46.9
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 4.0e-13 79.7 195 34.9
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 9.8e-12 75.1 106 44.3
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-11 74.7 106 42.5
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-11 74.7 106 42.5
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-11 74.7 106 42.5
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 2.2e-11 73.9 42 76.2
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 2.9e-11 73.6 41 80.5
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 4.9e-11 72.8 103 41.7
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 3.5e-09 66.6 185 38.4
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 1.0e-08 65.1 44 63.6
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.1e-07 61.6 188 34.6
VMungo1383G1328 Vigna mungo HOM05D059069 ORTHO05D007352 4.7e-06 56.2 60 61.7


User provided reference genes

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