Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 1.0e-29 132.9 72 100.0
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 5.5e-28 127.1 70 94.3
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 7.1e-28 126.7 70 92.9
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 3.5e-27 124.4 70 92.9
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 2.6e-22 108.2 70 82.9
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 2.6e-22 108.2 72 75.0
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 2.6e-22 108.2 70 81.4
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 4.5e-22 107.5 70 78.6
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 5.8e-22 107.1 71 83.1
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 1.7e-21 105.5 70 80.0
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 2.2e-21 105.1 70 78.6
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 3.8e-21 104.4 71 81.7
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 5.0e-21 104.0 67 82.1
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 5.0e-21 104.0 70 78.6
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 6.5e-21 103.6 70 77.1
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 8.4e-21 103.2 67 76.1
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 8.4e-21 103.2 70 70.0
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 8.4e-21 103.2 70 70.0
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.1e-20 102.8 70 78.6
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 1.4e-20 102.4 68 77.9
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 1.4e-20 102.4 68 77.9
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 1.4e-20 102.4 68 76.5
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 1.9e-20 102.1 70 68.6
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 3.2e-20 101.3 70 75.7
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 3.2e-20 101.3 70 70.0
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 3.2e-20 101.3 70 77.1
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 3.2e-20 101.3 70 72.9
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 4.2e-20 100.9 67 77.6
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 7.1e-20 100.1 70 75.7
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 9.3e-20 99.8 70 77.1
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 9.3e-20 99.8 70 71.4
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 1.2e-19 99.4 70 74.3
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 1.2e-19 99.4 70 74.3
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.6e-19 99.0 70 68.6
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 2.1e-19 98.6 67 77.6
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 3.5e-19 97.8 64 75.0
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 4.6e-19 97.4 67 74.6
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 6.1e-19 97.1 67 73.1
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 7.9e-19 96.7 67 76.1
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 7.9e-19 96.7 67 70.1
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 1.0e-18 96.3 70 71.4
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 1.0e-18 96.3 70 65.7
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.3e-18 95.9 67 67.2
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 1.8e-18 95.5 68 73.5
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 3.0e-18 94.7 68 73.5
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 3.0e-18 94.7 70 70.0
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 3.9e-18 94.4 67 73.1
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 3.9e-18 94.4 71 66.2
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 5.1e-18 94.0 68 72.1
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 6.7e-18 93.6 70 65.7
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 8.7e-18 93.2 68 66.2
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 1.1e-17 92.8 72 66.7
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 3.3e-17 91.3 71 66.2
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 4.3e-17 90.9 71 62.0
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 4.3e-17 90.9 70 60.0
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 9.7e-17 89.7 71 60.6
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 9.7e-17 89.7 71 60.6
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 9.7e-17 89.7 71 69.0
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 9.7e-17 89.7 71 63.4
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 1.3e-16 89.4 68 64.7
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 1.6e-16 89.0 71 59.2
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 2.8e-16 88.2 71 59.2
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 2.8e-16 88.2 71 57.7
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 3.7e-16 87.8 73 67.1
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 8.2e-16 86.7 68 64.7
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 1.8e-15 85.5 67 64.2
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 3.1e-15 84.7 66 62.1
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 3.1e-15 84.7 65 63.1
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 4.1e-15 84.3 68 63.2
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 9.0e-15 83.2 67 58.2
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 1.2e-14 82.8 70 65.7
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 1.5e-14 82.4 67 56.7
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 1.5e-14 82.4 67 56.7
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 2.0e-14 82.0 71 54.9
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 2.0e-14 82.0 71 54.9
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 2.6e-14 81.6 65 58.5
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 2.6e-14 81.6 67 61.2
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 3.4e-14 81.3 89 55.1
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 3.4e-14 81.3 70 58.6
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 3.4e-14 81.3 70 58.6
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 3.4e-14 81.3 70 58.6
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 3.4e-14 81.3 70 58.6
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 3.4e-14 81.3 70 58.6
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 1.0e-13 79.7 68 63.2
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 1.7e-13 79.0 71 56.3
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 6.5e-13 77.0 50 72.0
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 9.4e-12 73.2 72 54.2
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 6.1e-11 70.5 44 77.3
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 7.9e-11 70.1 69 52.2
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 2.3e-10 68.6 65 52.3
vmacro20294 Vaccinium macrocarpon HOM05D007530 ORTHO05D009556 2.3e-10 68.6 44 75.0
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 3.9e-10 67.8 71 47.9
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 3.9e-10 67.8 72 54.2
arahy.Tifrunner.gnm1.ann1.K2ZES1 Arachis hypogaea HOM05D008645 ORTHO05D009556 6.7e-10 67.0 44 81.8
Cpa.g.sc11.95 Carica papaya HOM05D007530 ORTHO05D009556 9.7e-09 63.2 42 71.4
CAN.G243.17 Capsicum annuum HOM05D007530 ORTHO05D009556 1.7e-08 62.4 44 68.2
CSS0006801 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 2.2e-08 62.0 43 69.8
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 2.2e-08 62.0 46 67.4
Peaxi162Scf00014g00124 Petunia axillaris HOM05D007530 ORTHO05D009556 2.8e-08 61.6 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 6.3e-08 60.5 67 47.8
Lj1g0004890 Lotus japonicus HOM05D007530 ORTHO05D009556 6.3e-08 60.5 41 70.7
Sabra16G0114900 Salix brachista HOM05D007530 ORTHO05D000135 3.1e-07 58.2 52 61.5
Oeu033582.2 Olea europaea HOM05D007530 ORTHO05D009556 2.0e-06 55.5 40 65.0
Hma1.2p1_0024F.1_g016010 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 2.6e-06 55.1 39 69.2


User provided reference genes

Program Settings