Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.2e-109 399.1 215 100.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 4.8e-88 328.2 213 85.4
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 1.2e-78 297.0 287 64.1
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 9.4e-76 287.3 217 76.0
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 2.0e-73 279.6 217 74.2
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 6.6e-61 238.0 217 62.7
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 3.3e-60 235.7 214 64.0
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 3.6e-59 232.3 211 62.1
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 8.9e-50 201.1 214 51.9
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 2.0e-49 199.9 212 56.1
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 9.8e-49 197.6 216 50.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.0e-45 187.6 214 48.1
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 3.0e-45 186.0 213 47.4
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 9.5e-44 181.0 214 47.7
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.4e-42 177.2 214 48.1
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.2e-42 175.3 214 45.8
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.2e-41 174.1 214 45.8
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.0e-41 173.3 216 47.2
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.4e-41 172.6 216 44.0
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.8e-41 171.8 214 45.3
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 5.8e-41 171.8 214 47.2
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 9.8e-41 171.0 214 47.2
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.7e-40 170.2 214 47.2
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.7e-40 170.2 214 47.2
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.7e-40 170.2 213 45.5
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 3.7e-40 169.1 215 44.2
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 4.9e-40 168.7 214 44.4
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 6.4e-40 168.3 214 45.3
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.3e-40 167.9 214 46.3
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.4e-39 167.2 200 46.5
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.9e-39 166.8 206 49.0
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 2.4e-39 166.4 214 43.5
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.4e-39 165.2 213 43.7
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 9.2e-39 164.5 214 43.5
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.6e-38 162.2 214 45.8
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 7.8e-38 161.4 213 44.1
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-37 160.2 214 43.0
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 3.0e-37 159.5 216 43.1
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 6.6e-37 158.3 216 43.1
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.1e-36 157.5 213 42.7
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 4.3e-36 155.6 216 43.1
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 4.3e-36 155.6 214 43.9
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 5.6e-36 155.2 213 42.3
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 9.5e-36 154.5 206 46.1
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 2.1e-35 153.3 206 44.7
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.8e-35 152.9 217 42.9
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 8.1e-35 151.4 217 42.9
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.1e-34 149.4 213 39.9
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 9.2e-31 137.9 216 36.6
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.2e-30 137.5 216 38.9
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 2.7e-30 136.3 215 35.8
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 6.0e-30 135.2 215 34.9
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.0e-29 134.4 215 34.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.3e-29 134.0 214 38.8
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 5.1e-29 132.1 214 35.0
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.1e-27 126.7 212 39.6
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 4.4e-25 119.0 209 34.9
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.8e-25 118.6 214 35.0
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 4.2e-23 112.5 214 30.8
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 5.4e-23 112.1 215 31.2
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 9.3e-23 111.3 208 37.0
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.2e-22 110.9 214 31.3
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.6e-22 110.5 199 36.7
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 6.0e-22 108.6 139 43.2
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.3e-21 106.7 61 85.2
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 2.3e-21 106.7 212 32.5
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 3.0e-21 106.3 82 64.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-21 106.3 214 31.3
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 3.0e-21 106.3 214 31.3
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 6.6e-21 105.1 213 35.7
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 8.7e-21 104.8 70 72.9
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.1e-20 104.4 82 63.4
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.5e-20 104.0 93 52.7
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 4.3e-20 102.4 60 80.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 9.6e-20 101.3 120 48.3
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.1e-18 97.8 213 32.4
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 4.0e-18 95.9 215 32.1
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.0e-18 95.9 213 31.5
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.0e-18 95.9 120 45.0
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 6.9e-18 95.1 211 31.3
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.6e-17 93.2 185 34.1
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 7.6e-17 91.7 120 49.2
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 9.9e-17 91.3 211 28.9
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 9.9e-17 91.3 86 50.0
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 9.9e-17 91.3 163 38.0
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 1.3e-16 90.9 76 60.5
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.3e-16 90.9 213 30.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.7e-16 90.5 120 46.7
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 2.9e-16 89.7 120 48.3
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 2.9e-16 89.7 120 45.8
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 3.8e-16 89.4 120 46.7
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 1.4e-15 87.4 120 43.3
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 4.2e-15 85.9 96 44.8
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 5.4e-15 85.5 120 44.2
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 5.4e-15 85.5 120 44.2
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 5.4e-15 85.5 86 47.7
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-14 84.0 199 31.2
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.6e-14 84.0 120 42.5
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.7e-14 83.2 120 41.7
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 3.5e-14 82.8 120 40.0
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 4.6e-14 82.4 120 42.5
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 7.9e-14 81.6 113 43.4
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.0e-13 81.3 60 61.7
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.3e-13 80.9 58 62.1
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 3.9e-13 79.3 59 57.6
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.9e-13 79.3 120 40.8
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.1e-13 79.0 120 40.8
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.1e-13 79.0 120 40.8
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 5.1e-13 79.0 120 41.7
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 8.7e-13 78.2 61 57.4
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.1e-12 77.8 120 39.2
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 4.3e-12 75.9 178 33.7
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 5.6e-12 75.5 61 57.4
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 1.6e-11 73.9 120 39.2
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.6e-11 73.9 138 31.9
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 8.1e-11 71.6 56 55.4
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 3.1e-10 69.7 120 36.7
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 4.0e-10 69.3 120 37.5
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.0e-10 69.3 120 37.5
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.0e-10 69.3 120 37.5
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.2e-09 67.8 141 35.5
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.5e-09 67.4 53 60.4
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.5e-09 67.4 53 60.4
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 1.5e-09 67.4 66 50.0
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 2.0e-09 67.0 199 26.6
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 3.4e-09 66.2 59 55.9
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.8e-09 65.5 86 34.9
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 9.9e-09 64.7 58 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2603 Anthoceros agrestis HOM05D004264 ORTHO05D004680 1.7e-08 63.9 175 29.1
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.8e-08 62.8 120 35.8
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 8.4e-08 61.6 179 26.8
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.4e-07 60.8 118 35.6
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.7e-06 56.6 116 35.3
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.5e-06 56.2 112 35.7
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 3.5e-06 56.2 212 25.9


User provided reference genes

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