Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G088000 Phaseolus vulgaris HOM05D002560 ORTHO05D017207 2.2e-77 292.4 160 100.0
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 8.7e-26 120.9 133 65.4
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 2.1e-24 116.3 133 62.4
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 4.6e-19 98.6 154 46.1
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 1.1e-17 94.0 135 45.2
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 1.9e-17 93.2 126 49.2
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 3.3e-17 92.4 126 48.4
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 7.4e-17 91.3 126 48.4
Cpa.g.c37981 Carica papaya HOM05D002560 ORTHO05D017207 2.1e-16 89.7 116 54.3
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 8.2e-16 87.8 134 48.5
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.1e-15 87.4 126 47.6
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.1e-15 87.4 129 48.1
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.4e-15 87.0 112 50.9
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 1.4e-15 87.0 112 50.9
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 1.8e-15 86.7 126 49.2
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.4e-15 86.3 129 48.1
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 3.1e-15 85.9 126 45.2
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 3.1e-15 85.9 127 46.5
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 9.0e-15 84.3 126 46.8
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 9.0e-15 84.3 109 48.6
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 9.0e-15 84.3 126 46.8
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 9.0e-15 84.3 129 47.3
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 9.0e-15 84.3 129 47.3
MELO3C027185.2 Cucumis melo HOM05D002560 ORTHO05D017207 1.5e-14 83.6 108 47.2
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 1.5e-14 83.6 126 44.4
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 1.5e-14 83.6 130 47.7
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 2.6e-14 82.8 126 46.0
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 3.4e-14 82.4 126 44.4
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 4.5e-14 82.0 128 44.5
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 5.8e-14 81.6 133 46.6
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 7.6e-14 81.3 127 47.2
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.7e-13 80.1 126 46.0
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 1.7e-13 80.1 127 45.7
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 2.2e-13 79.7 140 42.1
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 2.2e-13 79.7 126 43.7
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 2.9e-13 79.3 133 45.1
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 2.9e-13 79.3 119 47.9
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 3.8e-13 79.0 134 41.8
Lj2C63G9 Lonicera japonica HOM05D002560 ORTHO05D003782 4.9e-13 78.6 116 42.2
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 4.9e-13 78.6 111 48.6
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 4.9e-13 78.6 128 43.8
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 6.5e-13 78.2 133 43.6
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 1.4e-12 77.0 132 42.4
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 1.4e-12 77.0 135 42.2
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.5e-12 76.3 127 43.3
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 3.2e-12 75.9 143 39.2
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 3.2e-12 75.9 117 46.2
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 4.2e-12 75.5 112 45.5
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 4.2e-12 75.5 133 42.9
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 4.2e-12 75.5 133 42.9
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 5.5e-12 75.1 143 39.2
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 7.1e-12 74.7 119 42.9
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 9.3e-12 74.3 112 45.5
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 1.6e-11 73.6 135 40.0
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.1e-11 73.2 108 41.7
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.1e-11 73.2 139 43.2
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 2.1e-11 73.2 129 41.1
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 2.1e-11 73.2 129 41.1
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 2.7e-11 72.8 133 44.4
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 3.5e-11 72.4 128 40.6
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 3.5e-11 72.4 85 54.1
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 4.6e-11 72.0 129 42.6
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 4.6e-11 72.0 109 42.2
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 4.6e-11 72.0 91 51.6
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 6.1e-11 71.6 114 46.5
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 6.1e-11 71.6 127 40.9
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.1e-11 71.6 143 38.5
COL.COLO4_08634 Corchorus olitorius HOM05D002560 ORTHO05D003782 7.9e-11 71.2 65 61.5
Gohir.A11G330100 Gossypium hirsutum HOM05D002560 ORTHO05D017207 7.9e-11 71.2 122 42.6
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 7.9e-11 71.2 133 41.4
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 7.9e-11 71.2 133 42.1
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.0e-10 70.9 126 41.3
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 1.0e-10 70.9 83 57.8
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 1.3e-10 70.5 110 41.8
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.3e-10 70.5 113 42.5
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 1.3e-10 70.5 122 53.3
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 1.3e-10 70.5 76 53.9
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.8e-10 70.1 68 58.8
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.8e-10 70.1 68 58.8
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 1.8e-10 70.1 140 37.9
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.8e-10 70.1 139 41.0
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 3.0e-10 69.3 86 50.0
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 3.0e-10 69.3 126 39.7
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 3.0e-10 69.3 117 42.7
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 3.0e-10 69.3 133 41.4
Actinidia32555 Actinidia chinensis HOM05D002560 ORTHO05D017207 3.9e-10 68.9 52 63.5
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 3.9e-10 68.9 133 40.6
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 5.1e-10 68.6 60 61.7
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 5.1e-10 68.6 91 51.6
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 8.7e-10 67.8 112 45.5
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 8.7e-10 67.8 96 47.9
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 8.7e-10 67.8 63 57.1
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 8.7e-10 67.8 44 75.0
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.1e-09 67.4 57 63.2
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 1.1e-09 67.4 126 36.5
DCAR_023987 Daucus carota HOM05D002560 ORTHO05D017207 2.5e-09 66.2 113 40.7
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 2.5e-09 66.2 92 46.7
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 3.3e-09 65.9 63 55.6
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 4.3e-09 65.5 127 39.4
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 4.3e-09 65.5 115 42.6
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.7e-09 65.1 61 57.4
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 5.7e-09 65.1 112 41.1
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 7.4e-09 64.7 138 34.1
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 7.4e-09 64.7 128 41.4
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 9.7e-09 64.3 60 60.0
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 1.3e-08 63.9 115 40.9
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 1.3e-08 63.9 127 38.6
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.6e-08 63.5 128 39.8
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.8e-08 62.8 59 55.9
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.8e-08 62.8 59 55.9
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 3.7e-08 62.4 60 56.7
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 4.8e-08 62.0 116 40.5
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 4.8e-08 62.0 78 51.3
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 4.8e-08 62.0 72 54.2
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 6.3e-08 61.6 64 56.2
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 6.3e-08 61.6 59 54.2
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 8.2e-08 61.2 93 37.6
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 8.2e-08 61.2 79 49.4
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 1.1e-07 60.8 115 38.3
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 1.1e-07 60.8 115 38.3
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 1.1e-07 60.8 115 38.3
vmacro20347 Vaccinium macrocarpon HOM05D002560 ORTHO05D017207 1.1e-07 60.8 60 61.7
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 1.8e-07 60.1 109 33.9
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 2.4e-07 59.7 59 57.6
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 4.1e-07 58.9 125 38.4
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 5.3e-07 58.5 75 50.7
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 6.9e-07 58.2 117 37.6
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 1.2e-06 57.4 58 46.6
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 1.5e-06 57.0 63 52.4
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 2.0e-06 56.6 112 38.4
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 2.6e-06 56.2 112 38.4
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 2.6e-06 56.2 112 38.4
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 4.5e-06 55.5 59 55.9
Oeu064890.1 Olea europaea HOM05D002560 ORTHO05D017207 7.7e-06 54.7 74 40.5
PGSC0003DMG400011867 Solanum tuberosum HOM05D002560 ORTHO05D013255 7.7e-06 54.7 78 41.0


User provided reference genes

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