Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.3e-161 573.2 326 100.0
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.0e-121 440.7 327 77.1
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 1.3e-100 370.5 341 69.2
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 2.0e-93 346.7 333 68.5
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 5.6e-80 302.0 370 57.0
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.2e-79 300.8 389 52.4
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 6.9e-70 268.5 358 56.1
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.5e-64 250.8 204 69.1
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 5.3e-62 242.3 461 40.6
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 7.6e-61 238.4 245 57.6
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 3.1e-54 216.5 298 48.7
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.2e-51 206.5 232 54.7
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 7.1e-51 205.3 219 53.4
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 5.1e-49 199.1 154 72.1
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 4.3e-48 196.1 229 52.8
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.7e-48 195.7 229 52.8
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 2.8e-47 193.4 362 39.5
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 2.4e-46 190.3 218 55.0
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-45 188.0 230 51.7
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 7.6e-45 185.3 241 48.1
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.9e-43 180.6 346 42.2
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 5.5e-43 179.1 188 56.4
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 9.4e-43 178.3 344 40.4
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 4.6e-42 176.0 342 38.3
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 7.9e-42 175.3 339 39.5
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.8e-41 174.1 346 40.2
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.3e-41 173.7 241 48.1
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 2.3e-41 173.7 241 48.1
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 3.9e-41 172.9 240 46.2
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.9e-41 172.9 241 47.7
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 6.7e-41 172.2 233 47.2
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.8e-41 171.8 240 45.4
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.5e-40 171.0 218 48.2
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 2.5e-40 170.2 210 50.0
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.5e-40 170.2 344 40.1
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 3.3e-40 169.9 220 45.9
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 5.7e-40 169.1 226 50.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 8.2e-39 165.2 222 45.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-38 164.9 240 45.4
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.4e-38 164.5 209 48.3
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 1.4e-38 164.5 234 44.4
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 2.4e-38 163.7 208 48.6
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.1e-38 162.9 360 36.9
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.9e-38 162.2 188 51.1
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.2e-37 161.4 338 38.2
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 2.6e-37 160.2 340 35.0
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.4e-37 159.8 240 42.9
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.4e-37 159.8 240 42.9
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.4e-37 159.8 240 42.9
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.7e-36 157.5 211 45.5
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.1e-35 154.8 234 44.9
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.9e-35 154.1 233 44.2
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.5e-35 153.7 239 41.8
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 5.5e-35 152.5 230 43.9
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.6e-34 151.0 201 49.8
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.7e-34 150.2 222 45.0
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.7e-34 150.2 342 37.1
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.6e-34 149.8 226 42.9
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 6.1e-34 149.1 246 42.7
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 7.9e-34 148.7 214 43.5
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.4e-33 147.9 138 60.9
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 3.0e-33 146.7 184 46.7
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 3.9e-33 146.4 216 42.6
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 6.7e-33 145.6 246 41.9
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 8.8e-33 145.2 226 40.7
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 8.8e-33 145.2 329 36.2
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 2.0e-32 144.1 226 40.7
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 3.3e-32 143.3 232 40.1
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.3e-32 143.3 215 42.8
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.3e-32 143.3 231 41.6
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 4.4e-32 142.9 228 40.4
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 9.7e-32 141.7 205 46.8
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 9.7e-32 141.7 211 40.8
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 1.7e-31 141.0 217 42.9
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.2e-31 140.6 226 40.7
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 2.2e-31 140.6 219 41.1
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 2.8e-31 140.2 219 42.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 3.7e-31 139.8 324 37.0
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 4.8e-31 139.4 189 49.2
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 6.3e-31 139.0 212 39.2
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.4e-30 137.9 238 38.7
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.8e-30 137.5 226 41.6
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.4e-30 137.1 228 38.6
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 7.0e-30 135.6 296 37.8
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 9.1e-30 135.2 175 47.4
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 9.1e-30 135.2 331 33.5
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.7e-28 131.0 347 32.9
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.2e-28 130.6 341 33.7
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 8.5e-28 128.6 213 40.8
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.2e-27 126.7 181 44.2
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.1e-26 124.0 369 31.7
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 2.1e-26 124.0 349 32.7
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 3.6e-26 123.2 215 40.5
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 8.0e-26 122.1 343 30.6
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 2.6e-24 117.1 199 41.7
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 9.7e-24 115.2 124 50.8
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.7e-23 114.4 243 37.9
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 2.2e-23 114.0 234 36.3
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 6.3e-23 112.5 218 39.9
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 6.3e-23 112.5 143 45.5
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 6.3e-23 112.5 254 35.8
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.8e-22 110.9 250 34.8
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 4.1e-22 109.8 176 37.5
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 9.1e-22 108.6 257 32.3
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.6e-21 107.1 188 39.4
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.6e-21 107.1 189 40.2
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.0e-20 105.1 219 32.9
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.1e-19 101.7 224 32.1
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.1e-19 101.7 251 33.9
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.1e-19 101.7 226 33.6
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 4.2e-19 99.8 203 31.5
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 5.5e-19 99.4 217 35.0
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.5e-19 99.4 183 33.3
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 9.4e-19 98.6 223 35.4
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 9.4e-19 98.6 250 34.4
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.6e-18 97.8 231 30.3
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.7e-18 97.1 174 32.8
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 6.1e-18 95.9 219 32.0
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 1.0e-17 95.1 200 34.0
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 1.4e-17 94.7 112 48.2
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 5.2e-17 92.8 222 32.4
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 6.7e-17 92.4 220 33.2
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 6.7e-17 92.4 154 39.6
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 1.7e-15 87.8 112 45.5
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.7e-15 87.8 203 36.0
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.8e-15 87.0 201 33.3
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 6.3e-15 85.9 209 35.4
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.1e-14 85.1 164 32.3
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.4e-14 84.7 202 31.2
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-14 84.0 210 30.5
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 2.4e-14 84.0 199 31.7
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 7.0e-14 82.4 210 30.0
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 7.0e-14 82.4 192 33.9
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.0e-14 82.4 175 33.1
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 1.2e-13 81.6 205 31.7
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.6e-13 81.3 90 51.1
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.5e-13 79.7 210 30.0
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 2.2e-12 77.4 241 28.2
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 8.5e-12 75.5 244 29.1
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.5e-11 73.9 202 31.7
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 3.2e-11 73.6 97 41.2
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 7.2e-11 72.4 241 27.4
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.2e-10 71.6 172 26.7
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 3.6e-10 70.1 243 28.0
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 4.7e-10 69.7 198 30.8
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 6.1e-10 69.3 221 26.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.0e-09 68.6 226 26.1
Pp3c1_25250 Physcomitrium patens HOM05D029953 ORTHO05D005170 2.3e-09 67.4 178 28.1
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.6e-08 63.9 190 26.3
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 2.8e-07 60.5 251 28.7
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 3.1e-06 57.0 213 25.8
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 3.1e-06 57.0 232 28.0
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 4.1e-06 56.6 231 23.8
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 5.4e-06 56.2 257 26.1
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 9.1e-06 55.5 106 32.1


User provided reference genes

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