Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 9.4e-51 203.4 113 100.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.2e-48 196.4 113 97.3
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 3.7e-39 164.9 116 83.6
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.3e-36 156.4 116 83.6
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.0e-32 142.5 112 71.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.0e-25 120.2 111 62.2
Lj1g0021851 Lotus japonicus HOM05D003683 ORTHO05D004143 5.7e-24 114.4 113 69.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.7e-23 112.8 110 64.5
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.1e-22 110.2 112 59.8
Lalb_Chr01g0021341 Lupinus albus HOM05D003683 ORTHO05D004143 4.6e-21 104.8 111 61.3
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 3.9e-20 101.7 115 62.6
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.3e-17 92.4 107 54.2
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.1e-17 92.0 105 57.1
arahy.Tifrunner.gnm1.ann1.1L371M Arachis hypogaea HOM05D003683 ORTHO05D004143 2.0e-16 89.4 110 55.5
Ca_07830_v3 Cicer arietinum L. HOM05D003683 ORTHO05D004143 3.4e-16 88.6 113 58.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.7e-15 85.1 89 57.3
TPR.G26945 Trifolium pratense HOM05D003683 ORTHO05D004143 4.9e-15 84.7 115 57.4
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.9e-14 82.8 105 49.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.9e-14 82.8 101 51.5
arahy.Tifrunner.gnm1.ann1.00XFQD Arachis hypogaea HOM05D003683 ORTHO05D004143 2.4e-14 82.4 110 52.7
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.1e-14 81.6 104 54.8
Psat3g115360 Pisum sativum HOM05D003683 ORTHO05D004143 7.0e-14 80.9 114 50.9
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.7e-12 76.3 100 50.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.7e-12 76.3 100 49.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.0e-12 75.5 108 50.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 8.6e-12 73.9 109 49.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.1e-11 73.6 86 57.0
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.3e-11 72.0 106 46.2
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 3.3e-11 72.0 101 49.5
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 7.3e-11 70.9 101 46.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-10 70.1 104 44.2
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.6e-10 69.7 89 55.1
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.1e-10 69.3 104 44.2
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.1e-10 69.3 104 44.2
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.1e-10 69.3 104 44.2
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.1e-10 67.4 87 54.0
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.1e-09 67.0 109 46.8
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.3e-09 65.9 104 42.3
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.3e-09 65.9 101 47.5
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.0e-09 65.1 81 48.1
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.2e-08 63.5 94 47.9
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.2e-08 63.5 109 44.0
arahy.Tifrunner.gnm1.ann1.QFS1UJ Arachis hypogaea HOM05D066463 ORTHO05D004143 1.5e-08 63.2 106 50.9
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 118 44.1
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-08 62.4 86 47.7
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.4e-08 62.0 104 44.2
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.4e-08 62.0 87 49.4
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 4.4e-08 61.6 106 44.3
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.3e-07 60.1 75 52.0
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 1.7e-07 59.7 101 42.6
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.7e-07 59.7 103 44.7
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.7e-07 59.7 100 44.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 85 47.1
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.9e-07 58.9 92 40.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 3.7e-07 58.5 93 46.2
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 4.9e-07 58.2 49 57.1
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.9e-07 58.2 72 51.4
arahy.Tifrunner.gnm1.ann1.8P26IK Arachis hypogaea HOM05D066463 ORTHO05D004143 6.4e-07 57.8 53 66.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 6.4e-07 57.8 115 39.1
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.3e-07 57.4 103 38.8
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.3e-07 57.4 103 38.8
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 72 50.0
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 72 50.0
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 72 50.0
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.1e-06 57.0 72 50.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.1e-06 57.0 72 50.0
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.1e-06 57.0 103 41.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-06 56.2 103 41.7
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-06 56.2 103 41.7
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.9e-06 56.2 44 61.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.4e-06 55.8 78 47.4
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 3.2e-06 55.5 101 42.6
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-06 55.5 76 47.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 3.2e-06 55.5 93 44.1
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 3.2e-06 55.5 89 44.9
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.2e-06 55.5 92 44.6
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-06 55.1 76 46.1
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 4.1e-06 55.1 75 52.0
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.4e-06 54.7 90 44.4
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.1e-06 54.3 83 43.4
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.1e-06 54.3 44 63.6
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 7.1e-06 54.3 107 36.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 7.1e-06 54.3 44 61.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 7.1e-06 54.3 69 44.9
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 9.2e-06 53.9 57 56.1
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.2e-06 53.9 72 48.6


User provided reference genes

Program Settings