Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 0.0e+00 1429.5 871 100.0
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 0.0e+00 1181.8 861 80.6
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 0.0e+00 1154.8 881 81.4
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-283 979.5 889 65.2
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.3e-280 967.2 879 67.5
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 8.0e-275 950.7 889 66.8
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 1.0e-274 950.3 857 68.3
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.7e-272 943.0 862 68.8
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.7e-272 943.0 862 68.8
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-270 934.5 869 65.9
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.3e-269 933.3 884 66.0
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 3.3e-268 928.7 888 66.9
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 9.5e-268 927.2 862 69.8
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 3.4e-265 918.7 861 69.3
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 7.5e-265 917.5 888 64.9
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.7e-256 889.8 905 64.1
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 5.4e-231 805.1 881 56.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-229 800.8 815 60.5
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.1e-228 797.3 900 57.8
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 7.4e-228 794.7 887 58.6
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.4e-223 780.4 865 60.0
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 6.7e-221 771.5 894 53.8
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 2.1e-219 766.5 825 57.5
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.0e-218 762.3 896 53.0
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 4.5e-217 758.8 888 57.2
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 2.2e-216 756.5 894 57.4
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 3.9e-213 745.7 857 53.8
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.6e-211 740.3 874 56.2
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 4.1e-210 735.7 901 56.0
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 6.9e-210 734.9 858 54.1
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.1e-206 723.4 907 54.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 7.4e-204 714.9 903 52.4
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.7e-203 713.8 870 52.3
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 2.8e-203 713.0 800 62.1
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.2e-199 699.1 866 52.8
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 6.1e-198 695.3 862 55.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.4e-197 694.1 899 55.1
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 2.0e-196 690.3 869 54.5
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.3e-195 687.6 862 57.0
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.8e-195 685.6 776 53.7
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.4e-194 683.3 908 51.1
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 4.1e-194 682.6 904 52.9
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.2e-193 681.0 840 53.0
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.0e-193 680.2 866 58.5
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.7e-192 677.2 862 49.5
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 4.2e-191 672.5 887 50.4
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 3.6e-190 669.5 895 49.2
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 6.1e-190 668.7 885 49.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 6.7e-189 665.2 923 48.3
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 6.7e-189 665.2 893 50.4
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 4.4e-188 662.5 770 58.4
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.7e-188 662.1 845 50.7
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 2.2e-187 660.2 897 49.1
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 6.3e-187 658.7 886 53.2
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.5e-185 652.9 876 52.6
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.5e-185 652.5 870 49.4
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.2e-184 650.2 870 49.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 5.0e-184 649.0 870 49.2
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.9e-183 647.1 902 49.6
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.5e-183 645.6 870 49.0
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.8e-181 640.6 939 50.2
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 8.8e-181 638.3 907 50.1
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.0e-180 637.1 889 48.0
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.3e-179 634.4 849 50.3
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 6.3e-179 632.1 886 49.1
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 8.3e-179 631.7 847 50.8
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.1e-178 631.3 867 50.1
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 7.2e-175 618.6 964 45.2
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 1.8e-173 614.0 864 48.5
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.8e-173 614.0 877 49.3
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 6.3e-171 605.5 894 46.0
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 5.4e-170 602.4 879 47.4
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 2.9e-168 596.7 383 85.9
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 5.0e-168 595.9 906 49.8
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.3e-167 593.2 846 50.1
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 1.3e-163 581.3 868 49.4
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 1.4e-162 577.8 882 48.2
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 5.0e-160 569.3 903 48.2
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.1e-159 568.2 884 44.8
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.1e-159 568.2 853 49.4
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 2.5e-159 567.0 909 49.5
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.1e-158 563.9 737 51.4
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 8.0e-158 562.0 894 49.6
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.4e-157 561.2 885 48.1
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 8.9e-157 558.5 894 49.4
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 3.4e-156 556.6 897 49.2
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 5.8e-156 555.8 881 49.8
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 5.8e-156 555.8 902 49.7
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.7e-155 554.3 913 46.7
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.9e-155 553.5 895 48.0
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.7e-153 547.0 883 45.2
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 6.0e-153 545.8 878 44.8
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 7.8e-153 545.4 897 47.6
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 2.5e-151 540.4 910 46.3
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 3.3e-151 540.0 910 46.3
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.6e-150 537.7 883 46.3
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 5.2e-149 532.7 829 48.7
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 2.6e-148 530.4 938 44.2
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 8.3e-147 525.4 865 47.3
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.4e-146 523.9 907 47.3
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 4.1e-146 523.1 900 48.7
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 4.6e-145 519.6 878 42.4
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 8.9e-141 505.4 770 46.5
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 8.9e-141 505.4 862 40.7
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 3.6e-134 483.4 846 48.0
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 4.7e-134 483.0 875 42.1
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 2.4e-125 454.1 859 40.7
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 4.0e-125 453.4 740 49.1
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 2.7e-121 440.7 872 37.7
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 4.6e-121 439.9 370 63.2
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.8e-109 401.4 871 36.6
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 1.8e-101 374.8 479 48.0
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 8.4e-99 365.9 903 36.5
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-97 362.1 528 47.7
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.4e-93 348.6 823 36.2
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 6.1e-89 333.2 854 36.4
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 3.9e-80 303.9 631 39.5
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 8.8e-80 302.8 411 51.8
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-79 302.0 420 48.3
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.5e-79 302.0 202 79.2
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 6.5e-75 286.6 374 46.0
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.5e-74 285.4 402 52.0
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.1e-69 269.2 241 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 3.6e-65 254.2 540 39.1
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.5e-63 248.8 609 33.5
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 8.0e-57 226.5 182 62.1
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 1.6e-49 202.2 370 36.8
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.3e-46 192.6 162 58.6
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.7e-44 184.9 904 30.5
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 3.3e-42 177.9 151 64.2
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-34 152.1 376 36.2
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 4.9e-30 137.5 247 35.2
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.6e-28 131.0 103 64.1
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 6.6e-27 127.1 252 43.3
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 1.1e-26 126.3 457 25.6
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-24 119.8 98 57.1
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-24 119.8 98 57.1
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-24 119.0 359 32.6
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-23 115.9 75 81.3
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-22 112.1 73 82.2
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.2e-22 112.1 637 27.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.9e-21 109.0 89 74.2
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 3.9e-19 101.3 108 57.4
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 6.6e-19 100.5 364 31.3
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.6e-19 100.1 148 42.6
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.5e-15 89.4 46 89.1
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.3e-14 86.3 120 44.2
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.2e-14 85.5 65 70.8
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.8e-14 84.7 162 37.0
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-13 82.0 96 50.0
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.6e-12 79.3 137 38.7
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-12 79.0 137 38.7
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-12 79.0 137 38.7
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.7e-12 78.6 131 39.7
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.7e-12 78.6 131 39.7
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-10 71.6 142 40.1
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.3e-09 69.7 296 27.4
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.1e-09 68.9 42 83.3
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 2.8e-09 68.6 55 61.8
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 2.8e-09 68.6 55 61.8
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 4.8e-09 67.8 48 70.8
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 2.6e-07 62.0 277 35.0
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-06 58.5 45 73.3
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 6.4e-06 57.4 114 37.7


User provided reference genes

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