Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.8e-151 539.3 282 100.0
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 7.6e-134 480.7 284 89.4
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 5.7e-113 411.4 300 75.7
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 4.5e-102 375.2 302 69.9
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 5.9e-102 374.8 302 71.2
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 7.7e-102 374.4 300 71.3
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 6.8e-90 334.7 293 64.8
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 4.8e-88 328.6 312 61.9
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.2e-85 319.7 334 56.9
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 6.1e-83 311.6 296 59.5
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.0e-81 306.6 295 61.0
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 7.5e-81 304.7 296 58.1
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.4e-79 299.7 305 58.4
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 5.4e-79 298.5 338 55.0
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.0e-78 296.6 305 58.0
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 5.9e-70 268.5 296 56.8
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 5.2e-66 255.4 303 48.8
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 4.4e-65 252.3 302 48.3
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 4.9e-64 248.8 300 47.7
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.6e-62 242.3 325 47.1
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 5.0e-61 238.8 313 45.7
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 5.0e-61 238.8 298 49.0
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-60 237.3 309 44.7
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.5e-60 236.5 309 44.3
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.5e-60 236.5 309 44.3
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.2e-59 234.2 309 44.7
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 2.8e-59 233.0 314 44.3
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.8e-58 230.3 316 43.0
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 3.1e-58 229.6 323 43.3
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.1e-58 229.6 317 43.8
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 4.0e-58 229.2 310 44.5
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.6e-57 226.5 310 43.2
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 4.4e-57 225.7 323 42.7
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 5.8e-57 225.3 302 46.7
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 7.5e-57 224.9 330 43.3
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 9.8e-57 224.6 309 43.7
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 8.3e-56 221.5 306 44.8
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.2e-55 219.5 281 45.2
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 4.1e-55 219.2 316 44.3
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.6e-54 217.2 304 42.8
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 3.5e-54 216.1 312 42.9
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 6.0e-54 215.3 285 46.0
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 7.8e-54 214.9 307 43.6
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 7.8e-54 214.9 300 42.7
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-53 213.8 302 45.0
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 6.6e-53 211.8 279 44.1
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.5e-52 209.9 294 43.2
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 5.6e-52 208.8 353 37.7
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 7.3e-52 208.4 302 41.7
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 9.5e-52 208.0 316 42.1
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 9.5e-52 208.0 298 40.9
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 9.5e-52 208.0 297 43.1
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 9.5e-52 208.0 316 41.5
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 2.1e-51 206.8 301 42.9
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 2.8e-51 206.5 283 42.8
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 3.6e-51 206.1 311 40.8
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 4.7e-51 205.7 298 41.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.2e-51 205.3 316 40.2
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 8.1e-51 204.9 314 41.7
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 8.1e-51 204.9 293 43.0
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 2.3e-50 203.4 280 45.0
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 2.3e-50 203.4 316 39.2
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.3e-50 203.4 316 39.2
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.0e-50 202.6 310 43.5
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.5e-49 200.7 290 42.8
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.6e-49 199.9 300 41.7
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 9.9e-49 198.0 305 41.6
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.3e-48 197.6 325 42.5
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.7e-48 196.1 295 40.0
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 3.7e-48 196.1 300 40.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 6.4e-48 195.3 270 43.7
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 6.4e-48 195.3 323 37.8
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 8.4e-48 194.9 292 42.8
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.9e-47 193.7 224 54.5
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 3.2e-47 193.0 294 41.8
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 3.2e-47 193.0 300 39.7
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 7.1e-47 191.8 323 40.9
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.1e-47 191.8 319 39.2
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 2.7e-46 189.9 318 39.6
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 4.6e-46 189.1 288 41.7
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 6.0e-46 188.7 301 42.5
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.0e-45 188.0 277 41.2
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.6e-44 182.2 316 37.0
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 7.3e-44 181.8 301 37.9
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.2e-43 178.7 282 39.7
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.4e-42 176.8 315 37.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 8.9e-42 174.9 283 38.5
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 5.8e-41 172.2 284 38.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 5.8e-41 172.2 289 41.5
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 9.9e-41 171.4 310 36.1
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 1.3e-40 171.0 288 41.3
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.8e-40 169.5 314 38.9
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 4.9e-40 169.1 339 35.1
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.4e-39 167.5 281 38.4
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.4e-39 167.5 281 38.4
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.9e-39 167.2 305 36.7
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.2e-38 164.5 374 34.0
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.2e-38 164.5 281 37.4
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.2e-38 164.5 301 39.9
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-38 163.7 281 38.8
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 6.0e-38 162.2 303 38.3
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.3e-37 161.0 297 37.0
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.3e-37 161.0 354 33.9
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.3e-37 161.0 327 35.2
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.3e-36 156.4 283 38.5
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.3e-35 154.5 296 35.5
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 1.6e-35 154.1 282 35.8
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 2.8e-35 153.3 319 35.7
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.1e-34 151.4 304 34.5
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 2.6e-33 146.7 288 35.8
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 2.2e-32 143.7 306 38.6
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.6e-30 137.5 186 44.6
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.9e-30 135.2 230 41.7
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 6.6e-29 132.1 403 27.8
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 2.5e-28 130.2 189 46.6
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.3e-27 127.9 213 40.4
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 4.5e-25 119.4 139 45.3
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 2.4e-23 113.6 281 30.2
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.7e-22 110.2 155 37.4
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.8e-21 107.5 181 40.3
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 2.3e-21 107.1 101 54.5
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 6.7e-21 105.5 168 39.9
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 6.7e-21 105.5 243 29.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 7.4e-20 102.1 228 35.1
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 4.8e-19 99.4 219 34.7
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 1.4e-18 97.8 312 29.5
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.8e-18 97.4 335 26.3
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.5e-17 94.4 100 47.0
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 3.4e-17 93.2 72 63.9
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.7e-16 90.9 144 41.0
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 3.8e-16 89.7 204 33.8
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 3.8e-16 89.7 91 46.2
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.8e-13 80.9 335 25.4
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.9e-12 77.4 56 66.1
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.4e-12 75.5 50 72.0
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.6e-11 74.3 225 32.9
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.4e-10 70.5 45 64.4
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 1.2e-09 68.2 311 26.4
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 2.0e-09 67.4 234 28.2
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 4.5e-09 66.2 281 23.1
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 8.4e-08 62.0 127 34.6
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 1.2e-06 58.2 81 43.2
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 2.1e-06 57.4 116 37.9
FAN03G0395 Fragaria x ananassa HOM05D021264 ORTHO05D022594 2.7e-06 57.0 126 36.5
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 7.9e-06 55.5 69 50.7


User provided reference genes

Program Settings