Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G073300 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 1.1e-75 286.6 151 100.0
VMungo1383G1115 Vigna mungo HOM05D003932 ORTHO05D004546 3.0e-52 208.8 133 80.5
Glyma.18G224900 Glycine max HOM05D003932 ORTHO05D004546 2.4e-41 172.6 152 63.2
Lalb_Chr19g0127151 Lupinus albus HOM05D003932 ORTHO05D004546 5.1e-36 154.8 148 56.1
Lj1g0003765 Lotus japonicus HOM05D003932 ORTHO05D004546 2.0e-32 142.9 127 56.7
arahy.Tifrunner.gnm1.ann1.67TC14 Arachis hypogaea HOM05D003932 ORTHO05D004546 2.9e-31 139.0 155 51.0
arahy.Tifrunner.gnm1.ann1.BEZL7V Arachis hypogaea HOM05D003932 ORTHO05D004546 3.8e-31 138.7 140 52.9
Medtr8g032450 Medicago truncatula HOM05D003932 ORTHO05D004546 2.5e-30 136.0 160 47.5
Medtr8g433000 Medicago truncatula HOM05D003932 ORTHO05D004546 2.5e-30 136.0 160 47.5
Glyma.07G075500 Glycine max HOM05D003932 ORTHO05D004546 1.2e-29 133.7 130 52.3
Psat4g153400 Pisum sativum HOM05D003932 ORTHO05D004546 7.9e-29 131.0 156 45.5
Ca_25783_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 2.3e-28 129.4 131 51.1
Psat4g153440 Pisum sativum HOM05D003932 ORTHO05D004546 3.9e-28 128.6 149 46.3
Glyma.03G015500 Glycine max HOM05D003932 ORTHO05D004546 6.7e-28 127.9 130 51.5
Lj3g0012135 Lotus japonicus HOM05D003932 ORTHO05D004546 6.7e-28 127.9 144 49.3
Psat4g153520 Pisum sativum HOM05D003932 ORTHO05D004546 6.7e-28 127.9 134 51.5
TPR.G9818 Trifolium pratense HOM05D003932 ORTHO05D004546 6.7e-28 127.9 142 46.5
Lalb_Chr10g0097321 Lupinus albus HOM05D003932 ORTHO05D004546 5.7e-27 124.8 144 48.6
Cfa004206 Carpinus fangiana HOM05D003932 ORTHO05D004546 1.3e-26 123.6 139 43.2
Dinv32437 Davidia involucrata HOM05D003932 ORTHO05D004546 2.8e-26 122.5 146 45.9
Lj9A578T66 Lonicera japonica HOM05D003932 ORTHO05D004546 6.3e-26 121.3 140 46.4
arahy.Tifrunner.gnm1.ann1.MUI9WD Arachis hypogaea HOM05D003932 ORTHO05D004546 8.2e-26 120.9 152 46.1
arahy.Tifrunner.gnm1.ann1.VZ643L Arachis hypogaea HOM05D003932 ORTHO05D004546 8.2e-26 120.9 150 48.0
arahy.Tifrunner.gnm1.ann1.UY84ZS Arachis hypogaea HOM05D003932 ORTHO05D004546 1.1e-25 120.6 127 49.6
Ciclev10022587m.g Citrus clementina HOM05D003932 ORTHO05D004546 2.4e-25 119.4 138 44.2
Atru.chr5.428 Acer truncatum HOM05D003932 ORTHO05D004546 3.1e-25 119.0 128 46.9
Phvul.010G093700 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 4.1e-25 118.6 119 51.3
Haze_15204 Corylus avellana HOM05D003932 ORTHO05D004546 5.3e-25 118.2 139 41.7
Glyma.07G075400 Glycine max HOM05D003932 ORTHO05D004546 1.2e-24 117.1 137 48.2
GSVIVG01027494001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.0e-24 116.3 132 44.7
Potri.002G155500 Populus trichocarpa HOM05D003932 ORTHO05D004546 2.6e-24 115.9 147 41.5
FvH4_7g13460 Fragaria vesca HOM05D003932 ORTHO05D004546 4.5e-24 115.2 142 41.5
Atru.chr5.429 Acer truncatum HOM05D003932 ORTHO05D004546 5.9e-24 114.8 127 46.5
FAN03G2927 Fragaria x ananassa HOM05D003932 ORTHO05D004546 5.9e-24 114.8 121 47.1
FAN10G0548 Fragaria x ananassa HOM05D003932 ORTHO05D004546 5.9e-24 114.8 145 42.8
RcHm_v2.0_Chr1g0352831 Rosa chinensis HOM05D003932 ORTHO05D004546 5.9e-24 114.8 142 42.3
Sabra14G0057100 Salix brachista HOM05D003932 ORTHO05D004546 5.9e-24 114.8 130 43.8
GSVIVG01027495001 Vitis vinifera HOM05D003932 ORTHO05D004546 5.9e-24 114.8 140 42.1
Dinv32438 Davidia involucrata HOM05D003932 ORTHO05D004546 7.7e-24 114.4 147 41.5
RcHm_v2.0_Chr1g0352841 Rosa chinensis HOM05D003932 ORTHO05D004546 1.0e-23 114.0 131 43.5
Atru.chr5.430 Acer truncatum HOM05D003932 ORTHO05D004546 1.3e-23 113.6 127 46.5
MSTRG.28209 Avicennia marina HOM05D003932 ORTHO05D004546 1.7e-23 113.2 146 40.4
FAN06G3956 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.9e-23 112.5 142 40.8
FAN10G1165 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.9e-23 112.5 142 40.8
GSVIVG01027496001 Vitis vinifera HOM05D003932 ORTHO05D004546 3.8e-23 112.1 132 47.7
FAN06G0832 Fragaria x ananassa HOM05D003932 ORTHO05D004546 5.0e-23 111.7 142 40.8
FvH4_7g13461 Fragaria vesca HOM05D003932 ORTHO05D004546 6.5e-23 111.3 155 40.0
Potri.014G078900 Populus trichocarpa HOM05D003932 ORTHO05D004546 1.1e-22 110.5 141 39.0
VMungo0331G1015 Vigna mungo HOM05D003932 ORTHO05D004546 1.1e-22 110.5 143 44.8
FAN01G0068 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.4e-22 110.2 155 40.0
FAN06G4428 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.4e-22 110.2 155 40.0
MD07G1126000 Malus domestica HOM05D003932 ORTHO05D004546 3.2e-22 109.0 140 42.1
Cpa.g.sc18.210 Carica papaya HOM05D003932 ORTHO05D004546 4.2e-22 108.6 142 42.3
Hma1.2p1_0001F.1_g001770 Hydrangea macrophylla HOM05D003932 ORTHO05D004546 4.2e-22 108.6 145 39.3
Nitab4.5_0015647g0010 Nicotiana tabacum HOM05D003932 ORTHO05D004546 4.2e-22 108.6 134 44.8
PSO478G3215 Papaver somniferum HOM05D003932 ORTHO05D004546 7.2e-22 107.8 136 44.9
PGSC0003DMG400027784 Solanum tuberosum HOM05D003932 ORTHO05D004546 7.2e-22 107.8 126 44.4
FAN01G1053 Fragaria x ananassa HOM05D003932 ORTHO05D004546 9.4e-22 107.5 142 40.1
QL08p050127 Quercus lobata HOM05D003932 ORTHO05D004546 9.4e-22 107.5 127 43.3
TWI59G0559 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 9.4e-22 107.5 140 40.0
Actinidia33434 Actinidia chinensis HOM05D003932 ORTHO05D004546 1.2e-21 107.1 147 43.5
EL10Ac1g00516 Beta vulgaris HOM05D003932 ORTHO05D004546 1.2e-21 107.1 126 46.0
Cfa004205 Carpinus fangiana HOM05D003932 ORTHO05D004546 1.2e-21 107.1 165 38.2
Duzib133G0425 Durio zibethinus HOM05D003932 ORTHO05D004546 1.2e-21 107.1 146 40.4
PSO782G0460 Papaver somniferum HOM05D003932 ORTHO05D004546 1.6e-21 106.7 141 44.0
QL08p050106 Quercus lobata HOM05D003932 ORTHO05D004546 1.6e-21 106.7 147 38.1
Eucgr.E00193 Eucalyptus grandis HOM05D003932 ORTHO05D004546 2.1e-21 106.3 128 40.6
Cc00_g12140 Coffea canephora HOM05D003932 ORTHO05D004546 2.7e-21 105.9 109 50.5
Haze_15203 Corylus avellana HOM05D003932 ORTHO05D004546 2.7e-21 105.9 130 43.1
QL08p050082 Quercus lobata HOM05D003932 ORTHO05D004546 2.7e-21 105.9 127 42.5
SalBow5G0579 Salvia bowleyana HOM05D003932 ORTHO05D004546 2.7e-21 105.9 145 37.2
MD01G1049100 Malus domestica HOM05D003932 ORTHO05D004546 4.7e-21 105.1 146 40.4
Manes.05G038600 Manihot esculenta HOM05D003932 ORTHO05D004546 4.7e-21 105.1 148 39.9
Sed0026606 Sechium edule HOM05D003932 ORTHO05D004546 6.1e-21 104.8 138 44.9
Sc23g0003150 Simmondsia chinensis HOM05D003932 ORTHO05D004546 6.1e-21 104.8 134 44.0
Sopen01g037320 Solanum pennellii HOM05D003932 ORTHO05D004546 7.9e-21 104.4 120 45.0
Ah.02g122980 Amaranthus hybridus HOM05D003932 ORTHO05D004546 1.0e-20 104.0 123 43.9
CANSAT56G2307 Cannabis sativa HOM05D003932 ORTHO05D004546 1.0e-20 104.0 123 41.5
Ca_07852_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 1.4e-20 103.6 148 47.3
Migut.N01424 Erythranthe guttata HOM05D003932 ORTHO05D004546 1.8e-20 103.2 119 43.7
TWI14G0637 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 1.8e-20 103.2 145 37.2
Atru.chr5.432 Acer truncatum HOM05D003932 ORTHO05D004546 2.3e-20 102.8 140 43.6
Carub.0005s2787 Capsella rubella HOM05D003932 ORTHO05D004546 3.0e-20 102.4 138 39.1
Gohir.A11G086400 Gossypium hirsutum HOM05D003932 ORTHO05D004546 3.0e-20 102.4 156 39.1
Nitab4.5_0006421g0030 Nicotiana tabacum HOM05D003932 ORTHO05D004546 3.0e-20 102.4 157 39.5
Peaxi162Scf00021g01219 Petunia axillaris HOM05D003932 ORTHO05D004546 3.0e-20 102.4 140 38.6
SalBow5G4627 Salvia bowleyana HOM05D003932 ORTHO05D004546 3.0e-20 102.4 145 36.6
Sp5g02170 Schrenkiella parvula HOM05D003932 ORTHO05D004546 3.0e-20 102.4 144 41.7
unitig_22.g6806 Utricularia gibba HOM05D003932 ORTHO05D004546 3.0e-20 102.4 123 42.3
Cfa004207 Carpinus fangiana HOM05D003932 ORTHO05D004546 3.9e-20 102.1 130 40.8
Solyc01g091550.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 3.9e-20 102.1 120 44.2
Manes.05G038300 Manihot esculenta HOM05D003932 ORTHO05D004546 6.7e-20 101.3 146 35.6
BraA04t15840Z Brassica rapa HOM05D003932 ORTHO05D004546 8.8e-20 100.9 149 40.3
AUR62022756 Chenopodium quinoa HOM05D003932 ORTHO05D004546 8.8e-20 100.9 122 42.6
Hund16950 Selenicereus undatus HOM05D003932 ORTHO05D004546 8.8e-20 100.9 122 41.8
Gohir.D11G090600 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.1e-19 100.5 156 39.1
arahy.Tifrunner.gnm1.ann1.NCU55Y Arachis hypogaea HOM05D003932 ORTHO05D004546 1.5e-19 100.1 152 46.7
Manes.05G038400 Manihot esculenta HOM05D003932 ORTHO05D004546 2.0e-19 99.8 130 41.5
PSO478G2301 Papaver somniferum HOM05D003932 ORTHO05D004546 2.0e-19 99.8 149 40.9
ClCG05G001750 Citrullus lanatus HOM05D003932 ORTHO05D004546 2.6e-19 99.4 121 44.6
Gorai.007G096600 Gossypium raimondii HOM05D003932 ORTHO05D004546 2.6e-19 99.4 143 39.2
QL08p050077 Quercus lobata HOM05D003932 ORTHO05D004546 2.6e-19 99.4 137 41.6
MSTRG.28210 Avicennia marina HOM05D003932 ORTHO05D004546 3.3e-19 99.0 142 38.7
Lsat_1_v5_gn_7_5540 Lactuca sativa HOM05D003932 ORTHO05D004546 3.3e-19 99.0 130 39.2
Oeu053298.1 Olea europaea HOM05D003932 ORTHO05D004546 3.3e-19 99.0 136 39.0
BolC4t24695H Brassica oleracea HOM05D003932 ORTHO05D004546 4.4e-19 98.6 144 38.9
CsaV3_3G009140 Cucumis sativus L. HOM05D003932 ORTHO05D004546 4.4e-19 98.6 152 39.5
Prupe.2G158100 Prunus persica HOM05D003932 ORTHO05D004546 4.4e-19 98.6 144 38.2
PGSC0003DMG400027783 Solanum tuberosum HOM05D003932 ORTHO05D004546 4.4e-19 98.6 108 48.1
CAN.G170.13 Capsicum annuum HOM05D003932 ORTHO05D004546 5.7e-19 98.2 108 45.4
ECA236G1648 Erigeron canadensis HOM05D003932 ORTHO05D004546 5.7e-19 98.2 137 39.4
Lsat_1_v5_gn_7_5520 Lactuca sativa HOM05D003932 ORTHO05D004546 5.7e-19 98.2 136 37.5
Solyc01g091560.2 Solanum lycopersicum HOM05D003932 ORTHO05D004546 5.7e-19 98.2 148 39.2
BcaC02g10211 Brassica carinata HOM05D003932 ORTHO05D004546 7.4e-19 97.8 140 39.3
C04p31500 Brassica napus HOM05D003932 ORTHO05D004546 7.4e-19 97.8 140 39.3
Thhalv10006257m.g Eutrema salsugineum HOM05D003932 ORTHO05D004546 7.4e-19 97.8 116 43.1
Thecc.01G365900 Theobroma cacao HOM05D003932 ORTHO05D004546 7.4e-19 97.8 145 36.6
HPP92_025613 Vanilla planifolia HOM05D003932 ORTHO05D004546 7.4e-19 97.8 111 43.2
AT3G61200 Arabidopsis thaliana HOM05D003932 ORTHO05D004546 9.7e-19 97.4 138 38.4
arahy.Tifrunner.gnm1.ann1.LBI1HC Arachis hypogaea HOM05D003932 ORTHO05D004546 9.7e-19 97.4 152 45.4
Nn1g01410 Nelumbo nucifera HOM05D003932 ORTHO05D004546 9.7e-19 97.4 108 46.3
SalBow5G2663 Salvia bowleyana HOM05D003932 ORTHO05D004546 9.7e-19 97.4 145 35.2
SalBow5G3861 Salvia bowleyana HOM05D003932 ORTHO05D004546 9.7e-19 97.4 145 35.2
A04p01220 Brassica napus HOM05D003932 ORTHO05D004546 1.3e-18 97.1 149 38.9
AL5G43470 Arabidopsis lyrata HOM05D003932 ORTHO05D004546 1.7e-18 96.7 142 40.1
CARHR171510 Cardamine hirsuta HOM05D003932 ORTHO05D004546 2.2e-18 96.3 138 39.1
MELO3C006135.2 Cucumis melo HOM05D003932 ORTHO05D004546 2.2e-18 96.3 152 39.5
PSO478G2599 Papaver somniferum HOM05D003932 ORTHO05D004546 2.2e-18 96.3 131 42.0
Peaxi162Scf00021g01218 Petunia axillaris HOM05D003932 ORTHO05D004546 2.2e-18 96.3 108 44.4
Aa31LG10G15280 Aethionema arabicum HOM05D003932 ORTHO05D004546 6.3e-18 94.7 151 41.1
DCAR_025147 Daucus carota HOM05D003932 ORTHO05D004546 8.2e-18 94.4 159 35.2
AUR62004306 Chenopodium quinoa HOM05D003932 ORTHO05D004546 1.1e-17 94.0 132 42.4
COL.COLO4_12605 Corchorus olitorius HOM05D003932 ORTHO05D004546 1.1e-17 94.0 117 37.6
Manes.05G038500 Manihot esculenta HOM05D003932 ORTHO05D004546 1.1e-17 94.0 147 38.1
Sed0002580 Sechium edule HOM05D003932 ORTHO05D004546 1.1e-17 94.0 141 40.4
CiPaw.02G027200 Carya illinoinensis HOM05D003932 ORTHO05D004546 1.4e-17 93.6 104 46.2
DCAR_020430 Daucus carota HOM05D003932 ORTHO05D004546 1.4e-17 93.6 143 35.7
Sopen01g037330 Solanum pennellii HOM05D003932 ORTHO05D004546 1.4e-17 93.6 148 37.8
Aqoxy7G00392 Aquilegia oxysepala HOM05D003932 ORTHO05D004546 1.8e-17 93.2 127 40.2
ECA236G4160 Erigeron canadensis HOM05D003932 ORTHO05D004546 5.3e-17 91.7 117 41.9
Sed0003987 Sechium edule HOM05D003932 ORTHO05D004546 7.0e-17 91.3 147 42.2
SGA_v2.0_scaffold11G05654 Striga asiatica HOM05D003932 ORTHO05D004546 7.0e-17 91.3 147 34.0
Gorai.004G156800 Gossypium raimondii HOM05D003932 ORTHO05D004546 9.1e-17 90.9 142 36.6
AUR62022757 Chenopodium quinoa HOM05D003932 ORTHO05D004546 1.2e-16 90.5 122 41.0
CiPaw.02G026900 Carya illinoinensis HOM05D003932 ORTHO05D004546 1.6e-16 90.1 104 44.2
Gohir.D08G151100 Gossypium hirsutum HOM05D003932 ORTHO05D004546 1.6e-16 90.1 155 36.1
PGSC0003DMG400027782 Solanum tuberosum HOM05D003932 ORTHO05D004546 2.6e-16 89.4 99 46.5
Gohir.A08G129700 Gossypium hirsutum HOM05D003932 ORTHO05D004546 3.5e-16 89.0 89 46.1
MBI04_g04735_MAGBIO Magnolia biondii HOM05D003932 ORTHO05D004546 3.5e-16 89.0 126 42.1
Sopen01g037340 Solanum pennellii HOM05D003932 ORTHO05D004546 4.5e-16 88.6 149 36.9
Solyc01g091570.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 2.2e-15 86.3 149 36.2
Zm00001eb306670 Zea mays HOM05D003932 ORTHO05D004546 6.5e-15 84.7 108 39.8
ATR0757G134 Amborella trichopoda HOM05D003932 ORTHO05D004546 5.5e-14 81.6 119 38.7
CSS0035798 Camellia sinensis var. sinensis HOM05D003932 ORTHO05D004546 6.1e-13 78.2 71 56.3
CDE07G1632 Ceratophyllum demersum HOM05D003932 ORTHO05D004546 1.0e-12 77.4 118 33.9
Os07g0462700 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 3.0e-12 75.9 111 38.7
Os07g0463500 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 4.0e-12 75.5 114 38.6
RcHm_v2.0_Chr5g0032131 Rosa chinensis HOM05D003932 ORTHO05D004546 1.5e-11 73.6 60 58.3
TAR629G2445 Trochodendron aralioides HOM05D003932 ORTHO05D004546 1.5e-11 73.6 69 56.5
QL08p050131 Quercus lobata HOM05D003932 ORTHO05D004546 4.4e-11 72.0 73 42.5
EL10Ac1g00517 Beta vulgaris HOM05D003932 ORTHO05D004546 1.1e-09 67.4 67 47.8
Prupe.2G157800 Prunus persica HOM05D003932 ORTHO05D004546 3.1e-09 65.9 63 50.8
Zm00001eb341620 Zea mays HOM05D003932 ORTHO05D004546 5.9e-08 61.6 82 40.2
vmacro20959 Vaccinium macrocarpon HOM05D003932 ORTHO05D004546 7.7e-08 61.2 60 53.3
SEGI_14275 Sequoiadendron giganteum HOM05D003932 ORTHO05D004546 2.9e-07 59.3 106 32.1
ClCG02G000220 Citrullus lanatus HOM05D001332 ORTHO05D001894 1.1e-06 57.4 129 33.3
Sc16g0009830 Simmondsia chinensis HOM05D001332 ORTHO05D001894 1.5e-06 57.0 90 37.8
SEGI_37049 Sequoiadendron giganteum HOM05D003932 ORTHO05D004546 3.2e-06 55.8 131 29.0
SEGI_17469 Sequoiadendron giganteum HOM05D001332 ORTHO05D001894 5.5e-06 55.1 129 30.2
MELO3C023210.2 Cucumis melo HOM05D001332 ORTHO05D001894 7.2e-06 54.7 137 32.1
THA.LOC104819478 Tarenaya hassleriana HOM05D001332 ORTHO05D001894 7.2e-06 54.7 90 35.6
SEGI_33501 Sequoiadendron giganteum HOM05D001332 ORTHO05D001894 9.4e-06 54.3 117 29.9


User provided reference genes

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