Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 2.2e-74 282.3 155 100.0
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 1.2e-51 206.8 155 76.8
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 2.3e-47 192.6 160 71.2
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 5.3e-44 181.4 156 74.4
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 2.1e-32 142.9 144 59.7
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 7.4e-30 134.4 146 52.1
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 1.4e-28 130.2 145 49.0
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 2.0e-27 126.3 147 49.0
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 5.8e-27 124.8 147 48.3
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 1.7e-26 123.2 157 52.2
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.7e-26 123.2 145 45.5
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 1.4e-25 120.2 150 48.7
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 1.4e-25 120.2 152 57.2
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 1.4e-25 120.2 145 48.3
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 4.2e-25 118.6 148 54.1
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 7.1e-25 117.9 149 45.6
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.2e-24 117.1 146 50.0
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.6e-24 116.7 143 49.0
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.6e-24 116.7 145 44.1
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 6.0e-24 114.8 139 58.3
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 7.9e-24 114.4 148 45.3
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 2.3e-23 112.8 158 48.1
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 2.3e-23 112.8 151 44.4
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 5.1e-23 111.7 139 48.9
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 5.1e-23 111.7 133 61.7
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 5.1e-23 111.7 134 59.0
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 6.7e-23 111.3 139 46.8
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 8.7e-23 110.9 135 51.9
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.1e-22 110.5 145 45.5
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.5e-22 110.2 128 48.4
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.5e-22 110.2 128 48.4
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.5e-22 110.2 128 48.4
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.5e-22 110.2 139 45.3
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 2.5e-22 109.4 145 49.0
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 2.5e-22 109.4 144 54.9
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 4.3e-22 108.6 137 46.7
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 4.3e-22 108.6 150 51.3
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 4.3e-22 108.6 144 44.4
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 4.3e-22 108.6 151 43.7
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 5.7e-22 108.2 139 46.8
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 5.7e-22 108.2 102 51.0
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 7.4e-22 107.8 139 45.3
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 7.4e-22 107.8 130 47.7
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 1.3e-21 107.1 139 56.8
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.3e-21 107.1 142 45.1
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 1.3e-21 107.1 140 52.9
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 1.6e-21 106.7 145 50.3
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.6e-21 106.7 143 45.5
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 1.6e-21 106.7 137 46.7
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 2.1e-21 106.3 153 43.8
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 2.8e-21 105.9 145 45.5
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 3.7e-21 105.5 128 60.9
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 3.7e-21 105.5 147 43.5
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 3.7e-21 105.5 150 40.0
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 3.7e-21 105.5 132 53.8
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 4.8e-21 105.1 142 46.5
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 4.8e-21 105.1 96 55.2
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 6.2e-21 104.8 146 45.2
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 6.2e-21 104.8 146 45.2
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 6.2e-21 104.8 139 45.3
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 1.1e-20 104.0 148 45.9
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.4e-20 103.6 155 43.2
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 1.8e-20 103.2 140 46.4
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 1.8e-20 103.2 129 57.4
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 2.4e-20 102.8 140 44.3
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 4.0e-20 102.1 143 52.4
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 4.0e-20 102.1 150 42.0
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 5.3e-20 101.7 147 44.9
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 6.9e-20 101.3 150 45.3
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 1.2e-19 100.5 143 45.5
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 1.5e-19 100.1 96 54.2
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.5e-19 100.1 142 43.0
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 1.5e-19 100.1 142 43.0
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.5e-19 100.1 153 39.2
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 1.5e-19 100.1 131 42.0
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 2.6e-19 99.4 95 48.4
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 3.4e-19 99.0 140 42.9
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.5e-19 98.6 150 41.3
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 5.8e-19 98.2 127 44.1
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 5.8e-19 98.2 100 49.0
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.8e-19 98.2 150 41.3
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 7.6e-19 97.8 139 43.2
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 1.0e-18 97.4 102 45.1
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 3.8e-18 95.5 135 54.1
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.1e-17 94.0 120 45.0
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.4e-17 93.6 145 44.8
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 2.5e-17 92.8 88 53.4
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 4.2e-17 92.0 134 42.5
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 5.5e-17 91.7 147 40.1
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.1e-17 91.3 147 40.1
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.1e-17 91.3 147 40.1
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.2e-16 90.5 146 37.0
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.2e-16 90.5 127 42.5
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 1.2e-16 90.5 143 49.0
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.2e-16 90.5 138 39.1
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 1.6e-16 90.1 132 43.9
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 3.5e-16 89.0 142 52.1
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.8e-15 86.7 120 55.0
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 5.1e-15 85.1 88 50.0
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.1e-14 84.0 113 46.0
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 1.9e-14 83.2 107 40.2
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 1.9e-14 83.2 107 40.2
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 5.7e-14 81.6 88 48.9
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 9.7e-14 80.9 147 36.7
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 1.3e-13 80.5 135 48.9
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.3e-13 80.5 84 48.8
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 2.8e-13 79.3 153 38.6
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 2.8e-13 79.3 121 38.8
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 4.8e-13 78.6 154 38.3
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 5.3e-12 75.1 44 72.7
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.0e-11 73.2 130 37.7
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 1.0e-10 70.9 34 88.2
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 1.4e-09 67.0 139 36.7
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 1.9e-09 66.6 90 42.2
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.9e-09 66.6 99 36.4
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 4.2e-09 65.5 123 35.8
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.7e-08 62.8 92 48.9
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.7e-08 62.8 92 48.9
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 7.9e-08 61.2 91 39.6
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 6.7e-07 58.2 115 36.5
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 1.5e-06 57.0 43 62.8


User provided reference genes

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