Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.1e-46 189.5 85 100.0
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.5e-40 169.1 83 88.0
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.8e-39 164.9 87 83.9
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 4.8e-39 164.1 84 86.9
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 4.8e-39 164.1 84 85.7
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.4e-38 162.5 84 86.9
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.4e-38 162.5 85 84.7
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.4e-38 161.8 87 83.9
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.4e-38 161.8 85 83.5
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 3.1e-38 161.4 85 83.5
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 3.1e-38 161.4 87 81.6
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 4.0e-38 161.0 85 81.2
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 4.0e-38 161.0 85 81.2
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 4.0e-38 161.0 83 85.5
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 4.0e-38 161.0 86 86.0
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 5.3e-38 160.6 82 85.4
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 5.3e-38 160.6 87 82.8
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 5.3e-38 160.6 85 84.7
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.9e-38 160.2 81 84.0
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 6.9e-38 160.2 81 82.7
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.2e-37 159.5 86 86.0
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.5e-37 159.1 82 82.9
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.5e-37 159.1 84 83.3
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.5e-37 159.1 83 84.3
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.0e-37 158.7 84 84.5
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.0e-37 158.7 80 85.0
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 84.9
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.6e-37 158.3 88 83.0
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.6e-37 158.3 87 79.3
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.4e-37 157.9 86 84.9
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.4e-37 157.9 82 84.1
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.4e-37 157.9 80 85.0
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 3.4e-37 157.9 83 83.1
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 4.5e-37 157.5 84 82.1
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 7.6e-37 156.8 83 83.1
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 7.6e-37 156.8 80 81.2
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 7.6e-37 156.8 81 82.7
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 7.6e-37 156.8 82 84.1
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.9e-37 156.4 81 85.2
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 9.9e-37 156.4 81 85.2
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 9.9e-37 156.4 87 79.3
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.3e-36 156.0 82 84.1
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.7e-36 155.6 84 82.1
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.7e-36 155.6 85 82.4
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 2.2e-36 155.2 80 85.0
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 2.2e-36 155.2 80 85.0
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 2.2e-36 155.2 80 85.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 2.2e-36 155.2 83 84.3
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.9e-36 154.8 83 83.1
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 2.9e-36 154.8 81 84.0
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.8e-36 154.5 85 82.4
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.9e-36 154.1 80 82.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.9e-36 154.1 80 82.5
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 4.9e-36 154.1 83 81.9
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 4.9e-36 154.1 80 83.8
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 4.9e-36 154.1 81 82.7
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.4e-36 153.7 85 82.4
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 6.4e-36 153.7 88 79.5
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 8.4e-36 153.3 81 84.0
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 8.4e-36 153.3 81 77.8
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 8.4e-36 153.3 81 84.0
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 8.4e-36 153.3 83 79.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 8.4e-36 153.3 84 81.0
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.1e-35 152.9 83 81.9
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.1e-35 152.9 83 81.9
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.1e-35 152.9 83 81.9
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.4e-35 151.8 87 79.3
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.4e-35 151.8 87 78.2
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 2.4e-35 151.8 89 79.8
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.4e-35 151.8 88 79.5
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.2e-35 151.4 81 80.2
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 4.2e-35 151.0 81 82.7
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 5.4e-35 150.6 84 78.6
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 7.1e-35 150.2 81 82.7
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 7.1e-35 150.2 80 82.5
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 7.1e-35 150.2 80 82.5
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 9.3e-35 149.8 83 78.3
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 9.3e-35 149.8 85 81.2
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 1.2e-34 149.4 82 82.9
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.2e-34 149.4 81 82.7
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.2e-34 149.4 85 81.2
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.2e-34 149.4 81 80.2
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.6e-34 149.1 80 82.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.6e-34 149.1 80 82.5
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.1e-34 148.7 82 81.7
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 2.7e-34 148.3 81 84.0
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 4.6e-34 147.5 82 81.7
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.6e-34 147.5 84 78.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 6.0e-34 147.1 82 81.7
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 6.0e-34 147.1 82 81.7
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 6.0e-34 147.1 82 82.9
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 7.9e-34 146.7 81 80.2
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-33 146.0 82 80.5
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.8e-33 145.6 82 79.3
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.8e-33 145.6 83 79.5
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 2.3e-33 145.2 83 73.5
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.3e-33 145.2 88 77.3
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 3.9e-33 144.4 82 78.0
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 6.7e-33 143.7 79 82.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 6.7e-33 143.7 82 80.5
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-32 142.9 82 79.3
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 5.6e-32 140.6 79 81.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 7.4e-32 140.2 80 73.8
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 3.7e-31 137.9 77 80.5
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 8.1e-31 136.7 80 72.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.8e-30 135.6 79 74.7
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 6.9e-30 133.7 75 74.7
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.2e-29 132.9 62 90.3
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 5.8e-29 130.6 97 63.9
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 2.9e-28 128.3 153 47.1
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 3.5e-26 121.3 62 83.9
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.8e-22 109.0 79 62.0
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 5.3e-22 107.5 80 63.8
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 6.9e-22 107.1 62 80.6
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.9e-22 107.1 62 79.0
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 3.4e-21 104.8 63 76.2
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 5.8e-21 104.0 61 78.7
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.0e-20 103.2 60 75.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.7e-20 102.4 58 79.3
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.7e-20 102.4 58 75.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.2e-20 102.1 59 76.3
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 2.2e-20 102.1 58 81.0
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.9e-20 101.7 61 75.4
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 4.9e-20 100.9 59 74.6
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 8.4e-20 100.1 61 77.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-19 99.8 56 80.4
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.1e-19 99.8 56 80.4
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.4e-19 99.4 62 75.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.4e-19 99.4 62 72.6
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 2.5e-19 98.6 57 80.7
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 4.2e-19 97.8 59 78.0
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 4.2e-19 97.8 61 72.1
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 4.2e-19 97.8 61 63.9
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 7.1e-19 97.1 58 75.9
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 9.3e-19 96.7 59 78.0
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 9.3e-19 96.7 60 75.0
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.5e-18 94.7 66 71.2
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 6.0e-18 94.0 59 76.3
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 7.9e-18 93.6 59 76.3
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.8e-17 92.4 64 68.8
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.7e-15 84.7 64 62.5
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 6.9e-14 80.5 67 52.2
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.5e-13 79.3 76 52.6
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.5e-13 77.8 39 87.2
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 7.2e-11 70.5 62 53.2


User provided reference genes

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