Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G065100 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 4.4e-79 297.7 135 100.0
Phvul.008G065200 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 5.5e-74 280.8 135 91.9
Phvul.002G081800 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 6.1e-73 277.3 135 91.1
Phvul.002G081900 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 1.0e-72 276.6 135 90.4
Phvul.008G064900 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 2.2e-70 268.9 135 88.1
VMungo1383G3343 Vigna mungo HOM05D010387 ORTHO05D012879 1.5e-58 229.6 134 73.9
Phvul.008G065000 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 9.8e-55 216.9 135 75.6
Glyma.18G232566 Glycine max HOM05D010387 ORTHO05D012879 2.2e-30 136.0 139 51.1
Glyma.09G259700 Glycine max HOM05D010387 ORTHO05D012879 8.4e-30 134.0 141 50.4
Phvul.008G063300 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 1.8e-24 116.3 135 43.0
Phvul.008G063050 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 2.4e-24 115.9 135 44.4
Glyma.18G232632 Glycine max HOM05D010387 ORTHO05D012879 3.8e-22 108.6 136 43.4
Glyma.18G232500 Glycine max HOM05D010387 ORTHO05D012879 3.6e-17 92.0 136 39.0
Glyma.09G260000 Glycine max HOM05D036898 ORTHO05D035990 1.1e-16 90.5 138 34.1
VMungo1383G3327 Vigna mungo HOM05D010387 ORTHO05D012879 1.5e-15 86.7 137 36.5
Glyma.18G232700 Glycine max HOM05D010387 ORTHO05D012879 7.6e-15 84.3 136 38.2
Phvul.008G065450 Phaseolus vulgaris HOM05D036898 ORTHO05D035990 2.4e-13 79.3 134 31.3
Medtr1g058520 Medicago truncatula HOM05D000256 ORTHO05D000119 3.5e-12 75.5 122 34.4
Medtr1g060940 Medicago truncatula HOM05D000256 ORTHO05D000119 6.0e-12 74.7 130 35.4
TPR.G32106 Trifolium pratense HOM05D000256 ORTHO05D000119 3.0e-11 72.4 138 33.3
Medtr1g058400 Medicago truncatula HOM05D000256 ORTHO05D000119 3.9e-11 72.0 106 35.8
Medtr1g058430 Medicago truncatula HOM05D000256 ORTHO05D000119 3.9e-11 72.0 106 35.8
Psat6g084040 Pisum sativum HOM05D000256 ORTHO05D000119 5.1e-11 71.6 136 33.8
Medtr1g057250 Medicago truncatula HOM05D000256 ORTHO05D000119 6.7e-11 71.2 126 32.5
Prupe.1G055500 Prunus persica HOM05D000256 ORTHO05D000119 6.7e-11 71.2 109 36.7
MD04G1130600 Malus domestica HOM05D000256 ORTHO05D000119 8.7e-11 70.9 125 31.2
Medtr1g060930 Medicago truncatula HOM05D000256 ORTHO05D000119 1.1e-10 70.5 129 34.1
Phvul.008G065300 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 3.3e-10 68.9 122 32.0
Lalb_Chr06g0176141 Lupinus albus HOM05D000256 ORTHO05D031557 4.3e-10 68.6 139 33.8
VMungo1383G0639 Vigna mungo HOM05D000256 ORTHO05D000119 4.3e-10 68.6 143 35.0
FvH4_4g05610 Fragaria vesca HOM05D000256 ORTHO05D000119 5.6e-10 68.2 95 37.9
FAN12G4246 Fragaria x ananassa HOM05D000256 ORTHO05D000119 5.6e-10 68.2 95 37.9
Medtr1g058500 Medicago truncatula HOM05D000256 ORTHO05D000119 1.3e-09 67.0 143 29.4
TPR.G5119 Trifolium pratense HOM05D000256 ORTHO05D000119 1.3e-09 67.0 116 37.1
Atru.chr4.1808 Acer truncatum HOM05D000256 ORTHO05D000119 1.6e-09 66.6 136 34.6
Medtr1g057240 Medicago truncatula HOM05D000256 ORTHO05D000119 1.6e-09 66.6 126 31.7
Aa31LG2G14700 Aethionema arabicum HOM05D000256 ORTHO05D000119 3.7e-09 65.5 131 32.8
Lalb_Chr06g0176181 Lupinus albus HOM05D000256 ORTHO05D012879 6.2e-09 64.7 52 44.2
Manes.03G153500 Manihot esculenta HOM05D000256 ORTHO05D000119 8.2e-09 64.3 108 34.3
Lalb_Chr06g0176321 Lupinus albus HOM05D000256 ORTHO05D000119 1.1e-08 63.9 59 45.8
Medtr1g058410 Medicago truncatula HOM05D000256 ORTHO05D000119 1.1e-08 63.9 143 30.8
Medtr1g028420 Medicago truncatula HOM05D000256 ORTHO05D000119 1.4e-08 63.5 128 33.6
RcHm_v2.0_Chr4g0389421 Rosa chinensis HOM05D000256 ORTHO05D000119 1.4e-08 63.5 100 37.0
TPR.G14457 Trifolium pratense HOM05D000256 ORTHO05D000119 1.4e-08 63.5 125 32.8
Phvul.008G063600 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.8e-08 63.2 144 34.0
Prupe.1G062300 Prunus persica HOM05D000256 ORTHO05D000119 1.8e-08 63.2 126 30.2
Lalb_Chr06g0176131 Lupinus albus HOM05D000256 ORTHO05D000119 2.4e-08 62.8 133 30.1
AL7G38890 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 5.3e-08 61.6 122 32.0
TPR.G22641 Trifolium pratense HOM05D000256 ORTHO05D000119 5.3e-08 61.6 114 35.1
Lalb_Chr06g0176331 Lupinus albus HOM05D000256 ORTHO05D000119 9.0e-08 60.8 144 33.3
MD17G1052700 Malus domestica HOM05D000256 ORTHO05D000119 9.0e-08 60.8 59 44.1
Phvul.008G065350 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 9.0e-08 60.8 136 32.4
AL3G29940 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 1.2e-07 60.5 64 35.9
TPR.G36139 Trifolium pratense HOM05D000256 ORTHO05D000119 1.2e-07 60.5 62 32.3
TPR.G943 Trifolium pratense HOM05D000256 ORTHO05D000119 1.2e-07 60.5 62 32.3
VMungo1383G1351 Vigna mungo HOM05D000256 ORTHO05D000119 1.2e-07 60.5 138 32.6
Phvul.008G062900 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.5e-07 60.1 144 34.7
Prupe.1G062100 Prunus persica HOM05D000256 ORTHO05D000119 1.5e-07 60.1 105 33.3
Lalb_Chr06g0176311 Lupinus albus HOM05D010387 ORTHO05D000119 2.0e-07 59.7 55 47.3
THA.LOC104812007 Tarenaya hassleriana HOM05D000256 ORTHO05D000119 2.0e-07 59.7 100 33.0
AL1G14350 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 3.4e-07 58.9 56 44.6
Medtr1g087960 Medicago truncatula HOM05D000256 ORTHO05D000119 3.4e-07 58.9 56 42.9
BcaC07g37967 Brassica carinata HOM05D000256 ORTHO05D000119 4.5e-07 58.5 124 29.8
BcaC07g37968 Brassica carinata HOM05D000256 ORTHO05D000119 4.5e-07 58.5 124 29.8
C07p47740 Brassica napus HOM05D000256 ORTHO05D000119 4.5e-07 58.5 114 33.3
BolC8t48347H Brassica oleracea HOM05D000256 ORTHO05D000119 4.5e-07 58.5 124 29.8
FAN22G0130 Fragaria x ananassa HOM05D000256 ORTHO05D000119 4.5e-07 58.5 109 32.1
Aa31LG10G5940 Aethionema arabicum HOM05D000256 ORTHO05D000119 5.8e-07 58.2 111 31.5
Haze_13486 Corylus avellana HOM05D000256 ORTHO05D000119 5.8e-07 58.2 76 36.8
Lalb_Chr06g0176301 Lupinus albus HOM05D000256 ORTHO05D000119 5.8e-07 58.2 55 45.5
Lj5g0009194 Lotus japonicus HOM05D000256 ORTHO05D000119 7.6e-07 57.8 128 26.6
Manes.03G154300 Manihot esculenta HOM05D000256 ORTHO05D000119 7.6e-07 57.8 126 29.4
BcaC06g33456 Brassica carinata HOM05D000256 ORTHO05D000119 1.0e-06 57.4 114 32.5
TPR.G21841 Trifolium pratense HOM05D000256 ORTHO05D000119 1.0e-06 57.4 129 31.0
arahy.Tifrunner.gnm1.ann1.7DU3RW Arachis hypogaea HOM05D010387 ORTHO05D031557 1.3e-06 57.0 56 44.6
arahy.Tifrunner.gnm1.ann1.BEA8X6 Arachis hypogaea HOM05D010387 ORTHO05D031557 1.3e-06 57.0 56 44.6
BolC7t45299H Brassica oleracea HOM05D000256 ORTHO05D000119 1.3e-06 57.0 113 31.9
BcaB04g18372 Brassica carinata HOM05D000256 ORTHO05D000119 1.7e-06 56.6 122 29.5
THA.LOC104801052 Tarenaya hassleriana HOM05D000256 ORTHO05D000119 2.2e-06 56.2 125 28.0
TPR.G24143 Trifolium pratense HOM05D000256 ORTHO05D000119 2.2e-06 56.2 147 25.9
Phvul.011G171500 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 2.9e-06 55.8 140 30.7
THA.LOC104801552 Tarenaya hassleriana HOM05D000256 ORTHO05D000119 2.9e-06 55.8 55 41.8
Cfa014872 Carpinus fangiana HOM05D000256 ORTHO05D000119 3.8e-06 55.5 58 39.7
Prupe.1G049500 Prunus persica HOM05D000256 ORTHO05D000119 3.8e-06 55.5 109 36.7
PGR042G3114 Punica granatum HOM05D000256 ORTHO05D005461 3.8e-06 55.5 54 40.7
CANSAT78G0605 Cannabis sativa HOM05D000256 ORTHO05D000119 4.9e-06 55.1 109 33.0
Carub.0005s1059 Capsella rubella HOM05D005246 ORTHO05D000119 6.5e-06 54.7 61 32.8
MELO3C024072.2 Cucumis melo HOM05D000256 ORTHO05D000119 6.5e-06 54.7 106 33.0


User provided reference genes

Program Settings