Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 2.5e-69 265.4 138 100.0
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 3.8e-62 241.5 138 92.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 2.6e-58 228.8 138 87.7
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 1.2e-55 219.9 138 84.8
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 1.0e-54 216.9 138 84.1
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.2e-41 172.6 138 71.0
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 3.1e-40 168.7 138 68.8
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 3.8e-38 161.8 140 64.3
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.1e-37 160.2 140 63.6
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 2.0e-34 149.4 138 63.0
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 4.4e-34 148.3 138 61.6
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 9.1e-32 140.6 137 59.1
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 2.3e-30 136.0 135 58.5
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 2.9e-30 135.6 138 58.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 8.6e-30 134.0 139 56.8
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 3.6e-28 128.6 138 55.1
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 4.7e-28 128.3 138 55.8
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 6.1e-28 127.9 138 55.8
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 8.0e-28 127.5 122 59.0
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.3e-27 125.9 132 55.3
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 3.0e-27 125.6 138 55.1
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.2e-26 123.6 142 47.9
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 2.6e-26 122.5 135 55.6
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 4.4e-26 121.7 139 52.5
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 7.5e-26 120.9 139 51.1
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 1.3e-25 120.2 138 50.7
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.9e-25 119.0 138 48.6
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 2.9e-25 119.0 114 60.5
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 3.7e-25 118.6 139 54.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 3.7e-25 118.6 138 50.7
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 6.3e-25 117.9 80 77.5
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 8.3e-25 117.5 114 57.9
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.8e-24 116.3 122 52.5
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 1.8e-24 116.3 133 57.1
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 3.2e-24 115.5 141 50.4
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 4.1e-24 115.2 134 50.0
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 7.0e-24 114.4 140 49.3
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 7.0e-24 114.4 121 52.1
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 9.2e-24 114.0 138 51.4
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 2.7e-23 112.5 141 51.8
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 2.7e-23 112.5 140 51.4
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 3.5e-23 112.1 139 51.1
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 4.6e-23 111.7 125 52.8
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 4.6e-23 111.7 133 50.4
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 4.6e-23 111.7 138 51.4
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 7.8e-23 110.9 114 57.0
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.0e-22 110.5 133 46.6
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.3e-22 110.2 139 46.8
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 2.9e-22 109.0 135 51.1
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 3.9e-22 108.6 131 48.9
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 6.6e-22 107.8 135 46.7
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 8.6e-22 107.5 132 47.0
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 8.6e-22 107.5 142 47.2
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.5e-21 106.7 135 46.7
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.5e-21 106.7 135 46.7
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.3e-21 105.1 133 53.4
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.3e-21 105.1 133 53.4
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.3e-21 105.1 133 53.4
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 4.3e-21 105.1 135 46.7
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 9.5e-21 104.0 138 47.1
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.6e-20 103.2 156 48.7
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 2.8e-20 102.4 138 47.1
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 4.7e-20 101.7 140 48.6
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 6.1e-20 101.3 145 44.8
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 8.0e-20 100.9 134 48.5
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 1.0e-19 100.5 140 50.0
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 1.4e-19 100.1 115 52.2
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 2.3e-19 99.4 112 52.7
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.2e-19 98.2 133 51.1
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 8.9e-19 97.4 124 46.0
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.2e-18 97.1 134 42.5
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 1.5e-18 96.7 137 44.5
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.4e-18 95.5 116 55.2
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 3.4e-18 95.5 106 48.1
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 3.4e-18 95.5 115 49.6
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 5.8e-18 94.7 137 40.9
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.8e-18 94.7 118 46.6
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.3e-17 93.6 123 44.7
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 1.3e-17 93.6 122 46.7
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 1.7e-17 93.2 121 45.5
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 2.2e-17 92.8 127 43.3
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 2.2e-17 92.8 117 47.0
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 4.9e-17 91.7 137 44.5
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 4.9e-17 91.7 134 43.3
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 8.3e-17 90.9 107 52.3
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.9e-16 89.7 134 40.3
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 2.4e-16 89.4 84 58.3
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 2.4e-16 89.4 101 52.5
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 2.4e-16 89.4 101 52.5
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 2.4e-16 89.4 84 58.3
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 5.4e-16 88.2 84 57.1
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 7.0e-16 87.8 129 45.0
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 7.0e-16 87.8 136 41.2
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 1.2e-15 87.0 117 48.7
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.6e-15 86.7 137 40.9
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 2.0e-15 86.3 86 59.3
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 2.0e-15 86.3 133 42.9
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 2.7e-15 85.9 79 59.5
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.5e-15 85.5 128 41.4
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 4.6e-15 85.1 124 41.9
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 7.8e-15 84.3 84 53.6
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 1.3e-14 83.6 148 40.5
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 5.0e-14 81.6 84 52.4
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 8.6e-14 80.9 110 41.8
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.1e-13 80.5 115 43.5
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 4.3e-13 78.6 97 46.4
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 7.3e-13 77.8 124 40.3
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.6e-12 76.6 124 41.1
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 2.1e-12 76.3 122 42.6
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 2.1e-12 76.3 122 42.6
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 2.8e-12 75.9 66 59.1
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 4.7e-12 75.1 87 52.9
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 4.7e-12 75.1 87 52.9
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 4.7e-12 75.1 124 39.5
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 1.4e-11 73.6 92 51.1
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.8e-11 73.2 147 32.7
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.8e-11 73.2 108 45.4
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 2.3e-11 72.8 66 57.6
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.3e-11 72.8 128 39.1
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 3.1e-11 72.4 72 56.9
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 4.0e-11 72.0 108 46.3
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 5.2e-11 71.6 133 37.6
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 6.8e-11 71.2 125 41.6
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 6.8e-11 71.2 80 47.5
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 1.2e-10 70.5 147 37.4
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.0e-10 69.7 98 41.8
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 2.0e-10 69.7 88 51.1
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 5.8e-10 68.2 131 36.6
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 8.3e-09 64.3 87 47.1
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 8.3e-09 64.3 120 35.0
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 3.2e-08 62.4 97 40.2
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 5.4e-08 61.6 137 31.4
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 7.1e-08 61.2 79 46.8
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 9.2e-08 60.8 136 32.4


User provided reference genes

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