Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.3e-307 1058.9 540 100.0
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 2.4e-293 1011.5 539 95.2
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 4.7e-265 917.5 543 87.5
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.3e-243 845.5 543 82.1
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 2.3e-243 845.5 545 80.6
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 7.3e-242 840.5 545 80.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 2.6e-239 832.0 543 78.3
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 5.4e-237 824.3 541 79.3
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 8.0e-233 810.4 539 77.0
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 4.6e-228 794.7 544 76.1
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.9e-227 791.6 544 75.6
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.1e-216 756.9 541 74.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 6.0e-212 741.1 545 72.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.3e-211 740.0 542 69.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 5.1e-211 738.0 541 69.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.5e-210 736.5 541 69.3
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.9e-210 736.1 541 68.9
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-201 706.8 543 67.8
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.3e-201 706.8 543 67.8
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.0e-199 699.5 542 65.7
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.6e-199 699.1 540 66.7
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 7.6e-199 697.6 540 66.7
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.1e-197 693.7 544 67.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 7.9e-196 687.6 544 64.9
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.0e-195 687.2 544 64.7
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.9e-195 685.3 544 65.8
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.6e-193 679.9 543 63.9
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 6.2e-193 677.9 543 65.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 7.6e-191 671.0 548 63.0
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.9e-190 669.1 539 64.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 6.4e-190 667.9 537 64.4
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-189 667.2 548 62.6
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.9e-189 666.4 541 62.8
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.4e-189 666.0 543 64.6
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.2e-189 665.6 539 64.0
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 5.5e-189 664.8 520 65.6
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 5.5e-189 664.8 540 63.7
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.3e-187 660.2 520 65.6
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 5.1e-187 658.3 539 63.8
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 8.7e-187 657.5 519 65.5
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.5e-186 656.8 539 64.0
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.3e-185 653.7 542 64.2
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 6.2e-185 651.4 543 62.1
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 8.2e-185 651.0 506 66.6
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.8e-184 649.8 539 62.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.1e-184 649.0 540 63.5
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 6.9e-184 647.9 544 61.2
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 3.4e-183 645.6 544 62.7
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 4.5e-183 645.2 543 61.3
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 6.5e-182 641.3 544 61.6
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.4e-181 640.2 542 61.1
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.6e-180 636.7 531 61.8
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.7e-180 636.0 540 61.7
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-179 633.6 520 63.8
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 2.3e-179 632.9 542 60.7
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.9e-179 632.1 520 63.5
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 5.1e-179 631.7 538 61.0
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.7e-179 631.3 520 63.7
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 1.1e-178 630.6 541 60.1
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 7.4e-178 627.9 540 60.0
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.7e-178 627.5 520 62.9
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-177 627.1 520 63.3
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.2e-177 626.3 541 60.1
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.8e-177 625.9 544 59.4
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.5e-175 618.6 544 59.7
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 2.2e-174 616.3 544 58.6
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 6.5e-174 614.8 541 59.3
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 6.5e-174 614.8 546 59.3
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.4e-173 613.6 527 60.7
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 3.2e-173 612.5 547 58.7
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 5.5e-173 611.7 541 59.5
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.2e-172 610.5 541 59.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-172 609.8 521 61.8
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 2.1e-172 609.8 541 59.5
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 6.1e-172 608.2 543 59.9
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.0e-171 607.4 528 60.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 5.1e-171 605.1 530 60.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.7e-169 600.1 530 58.9
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 3.4e-167 592.4 544 57.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 8.5e-166 587.8 533 58.5
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.4e-165 587.0 545 56.7
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 5.5e-165 585.1 545 56.5
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.2e-164 583.9 536 58.4
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-164 582.4 544 56.2
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 4.7e-164 582.0 548 57.5
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 7.9e-164 581.3 544 55.7
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.4e-163 580.5 547 55.0
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 8.8e-163 577.8 544 55.5
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 8.8e-163 577.8 544 55.5
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.0e-162 576.6 515 59.4
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.1e-160 570.9 536 57.1
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.1e-160 570.9 545 55.6
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 2.6e-159 566.2 502 56.8
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.0e-158 564.3 510 58.6
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 6.5e-158 561.6 548 55.7
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 5.5e-157 558.5 535 54.2
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-156 555.8 544 54.6
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.5e-149 531.9 548 52.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 2.1e-148 530.0 548 52.4
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 6.7e-147 525.0 412 65.3
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.2e-141 506.1 424 64.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 4.0e-131 472.6 320 75.9
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 7.5e-130 468.4 409 59.2
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 9.8e-130 468.0 421 58.0
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 3.7e-129 466.1 416 58.4
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 4.3e-125 452.6 496 50.0
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 2.8e-124 449.9 425 59.8
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 4.4e-122 442.6 541 47.1
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.9e-117 427.2 577 40.9
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.2e-113 413.7 491 48.1
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.7e-111 406.8 358 58.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 3.4e-106 389.8 539 44.3
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-101 374.0 463 46.0
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 7.3e-101 372.1 355 56.9
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 7.8e-95 352.1 497 39.4
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 3.6e-92 343.2 578 38.1
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.3e-89 334.7 265 63.0
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 8.4e-89 332.0 532 37.6
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 7.8e-87 325.5 318 55.3
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 6.9e-83 312.4 275 62.9
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 9.0e-83 312.0 486 38.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 2.5e-77 293.9 499 38.5
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 3.3e-77 293.5 501 38.7
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 9.6e-77 292.0 349 50.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 4.3e-69 266.5 238 64.3
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 9.6e-69 265.4 229 64.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.0e-54 218.8 193 55.4
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 8.2e-44 182.6 120 78.3
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.6e-39 168.3 112 75.9
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.4e-35 154.5 162 55.6
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.6e-34 151.8 579 25.9
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 7.7e-34 149.4 208 49.0
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.2e-32 142.9 103 68.0
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-29 135.2 116 57.8
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 9.7e-29 132.5 110 60.0
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.1e-27 129.0 492 27.4
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.1e-27 127.1 102 61.8
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 9.1e-27 125.9 95 65.3
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 3.5e-26 124.0 85 74.1
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 7.7e-26 122.9 224 36.2
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 5.0e-25 120.2 82 73.2
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 6.5e-25 119.8 114 51.8
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.0e-17 95.9 335 26.0
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.2e-13 82.4 226 32.3
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.4e-13 80.9 85 47.1
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 5.9e-10 70.1 81 50.6
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 7.8e-10 69.7 120 39.2
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 6.6e-09 66.6 496 23.0
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-07 62.4 62 53.2


User provided reference genes

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