Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 3.0e-179 631.7 315 100.0
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 5.7e-162 574.3 315 91.4
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.8e-152 542.7 316 86.1
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.7e-150 536.2 316 85.4
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 2.0e-130 469.5 314 74.2
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 2.2e-129 466.1 314 75.2
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 3.8e-126 455.3 318 73.0
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 2.6e-122 442.6 316 71.2
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 8.3e-121 437.6 315 71.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.1e-120 437.2 315 71.7
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 2.7e-111 406.0 317 66.2
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 4.3e-109 398.7 282 72.3
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.1e-99 367.5 312 61.5
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 1.1e-96 357.5 318 59.1
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 9.2e-96 354.4 315 58.4
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 1.1e-93 347.4 314 59.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 3.3e-93 345.9 317 61.5
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 9.5e-93 344.4 316 57.6
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 1.8e-91 340.1 316 57.0
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 6.8e-91 338.2 319 58.3
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.2e-90 337.4 313 56.9
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.7e-89 332.4 320 55.3
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 6.4e-89 331.6 319 56.7
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 8.3e-89 331.3 318 56.0
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 1.4e-88 330.5 322 58.7
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 2.4e-88 329.7 317 56.5
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.1e-87 326.6 282 59.9
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.1e-87 326.6 320 54.7
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.5e-87 325.9 319 53.6
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.0e-86 324.3 319 56.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.5e-85 319.7 316 53.8
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 1.6e-84 317.0 318 56.0
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 2.1e-84 316.6 283 59.0
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.7e-84 315.5 283 59.4
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.4e-83 313.9 318 54.4
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.8e-83 313.5 319 54.5
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 4.0e-83 312.4 318 55.7
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 4.0e-83 312.4 318 55.7
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 4.0e-83 312.4 317 52.4
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 4.0e-83 312.4 318 55.3
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.0e-83 312.4 318 55.3
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 5.2e-83 312.0 319 54.2
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 5.2e-83 312.0 318 52.5
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.8e-83 311.6 319 54.2
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.2e-82 310.8 319 53.9
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.5e-82 310.5 321 52.0
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.0e-82 310.1 318 55.7
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.4e-82 309.3 319 53.9
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-81 307.0 320 53.1
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 6.4e-81 305.1 313 54.3
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 4.1e-80 302.4 314 53.8
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.1e-80 302.4 319 53.3
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.2e-79 300.8 319 53.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 6.0e-79 298.5 312 54.2
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.3e-78 297.4 320 49.7
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.3e-78 297.4 333 51.1
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.3e-78 297.4 316 53.2
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.3e-78 296.6 337 50.4
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 3.0e-78 296.2 310 53.5
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 6.6e-78 295.0 316 52.2
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.1e-77 294.3 252 63.1
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 5.6e-77 292.0 331 51.4
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 7.3e-77 291.6 284 54.2
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.6e-76 290.4 320 50.9
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 8.1e-76 288.1 320 52.8
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.1e-75 287.7 318 50.6
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 5.2e-75 285.4 336 49.1
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.5e-74 283.9 317 49.8
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 5.8e-74 282.0 315 54.3
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 9.9e-74 281.2 320 52.2
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 2.2e-73 280.0 285 54.4
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 2.9e-73 279.6 314 50.0
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 4.2e-72 275.8 319 51.7
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 7.8e-71 271.6 315 47.3
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 6.6e-70 268.5 319 49.2
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.1e-69 267.7 283 51.6
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 4.8e-68 262.3 313 49.8
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 6.2e-68 261.9 283 51.2
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 6.2e-68 261.9 326 47.5
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.6e-66 256.5 311 47.3
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 5.8e-66 255.4 314 44.9
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 5.8e-66 255.4 315 46.0
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 2.2e-65 253.4 316 48.1
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 1.4e-64 250.8 317 45.7
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.7e-63 246.5 316 45.3
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 3.5e-63 246.1 312 45.5
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.6e-63 245.7 318 46.9
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.8e-62 243.8 322 47.8
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.0e-62 243.0 319 45.8
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 6.7e-62 241.9 315 46.0
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 7.4e-61 238.4 317 44.2
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.6e-60 237.3 317 47.6
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.1e-59 234.6 316 43.7
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.8e-59 233.8 316 44.6
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.4e-59 233.4 282 49.3
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.9e-59 231.9 299 46.8
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-58 230.7 308 45.1
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 4.5e-58 229.2 307 44.0
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 4.5e-58 229.2 336 41.4
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 7.6e-58 228.4 325 44.9
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 9.9e-58 228.0 319 42.6
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.7e-57 227.3 303 44.2
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 3.8e-57 226.1 319 42.3
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 6.4e-57 225.3 339 41.9
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 6.4e-57 225.3 276 47.5
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 2.7e-55 219.9 323 42.4
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.3e-54 216.9 274 47.8
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 6.7e-54 215.3 334 41.6
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-53 214.2 306 43.5
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 9.6e-53 211.5 279 46.2
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.3e-52 211.1 302 42.7
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 2.8e-52 209.9 307 43.3
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 4.8e-52 209.1 315 43.8
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.8e-51 207.2 315 37.8
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 2.0e-50 203.8 320 42.2
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 7.6e-50 201.8 320 43.8
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 7.6e-50 201.8 320 41.9
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.3e-49 201.1 305 41.6
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 1.3e-49 201.1 315 42.2
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.3e-49 201.1 318 42.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.9e-49 199.9 313 42.2
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.2e-48 196.1 315 42.9
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 4.2e-48 196.1 316 41.5
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 9.3e-48 194.9 314 41.4
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 9.3e-48 194.9 311 44.1
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.2e-47 194.5 317 37.2
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.6e-47 194.1 285 42.1
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.1e-47 193.7 280 44.3
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 2.7e-47 193.4 317 42.0
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 6.0e-47 192.2 282 41.1
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.0e-46 191.4 315 41.6
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 1.0e-46 191.4 315 39.7
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 3.9e-46 189.5 310 41.3
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.5e-45 187.6 312 37.5
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 5.7e-45 185.7 245 43.3
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 8.2e-44 181.8 316 41.5
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 6.9e-43 178.7 318 40.3
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 9.0e-43 178.3 263 41.4
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-42 177.6 320 40.0
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.5e-42 177.6 320 40.0
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 4.2e-40 169.5 197 46.7
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 7.2e-40 168.7 318 37.1
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 5.1e-38 162.5 330 38.8
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 2.8e-36 156.8 323 38.7
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 4.8e-36 156.0 313 37.7
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 6.3e-36 155.6 314 35.4
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.4e-35 153.7 333 32.4
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 2.4e-35 153.7 291 37.1
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 6.9e-35 152.1 317 35.3
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 9.1e-35 151.8 313 37.7
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 9.1e-35 151.8 313 37.7
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.6e-34 150.2 324 37.3
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 5.9e-34 149.1 298 36.6
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.7e-33 147.5 322 38.2
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.9e-33 146.7 199 44.7
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 9.4e-32 141.7 318 35.5
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 9.4e-32 141.7 318 35.5
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.0e-30 138.3 322 34.2
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 3.3e-29 133.3 264 34.1
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 4.8e-28 129.4 313 34.5
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.1e-24 118.2 371 30.2
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 2.5e-24 117.1 278 33.8
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.8e-22 110.9 278 33.1
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.3e-22 110.5 100 55.0
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.0e-22 110.2 293 31.4
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 2.8e-20 103.6 296 28.0
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 4.8e-20 102.8 250 33.2
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.1e-19 100.1 311 25.7
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 2.2e-17 94.0 315 28.9
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 6.1e-15 85.9 273 27.1
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 1.4e-14 84.7 311 23.2
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 3.3e-13 80.1 147 36.7
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.3e-12 78.2 94 45.7
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 9.1e-11 72.0 65 61.5
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 9.1e-11 72.0 65 61.5
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.6e-10 71.2 160 26.9
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 2.7e-10 70.5 63 60.3
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 3.5e-10 70.1 130 40.8
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 7.7e-10 68.9 249 24.5
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.7e-09 67.8 306 24.2
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 1.5e-08 64.7 61 57.4
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.6e-07 61.2 89 39.3
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.6e-07 60.1 89 39.3
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 4.7e-07 59.7 149 31.5
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 1.4e-06 58.2 152 30.3
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 4.0e-06 56.6 157 31.8


User provided reference genes

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