Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 2241.1 1118 100.0
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 2086.6 1074 96.5
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2013.0 1071 93.7
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2010.3 1071 93.7
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1958.3 1074 90.6
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1946.4 1075 90.1
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1942.9 1077 90.0
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1935.2 1074 88.5
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1929.8 1074 89.4
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1926.4 1071 89.4
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1815.8 1073 83.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1804.6 1071 83.1
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1803.5 1073 82.7
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1800.8 1080 82.3
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1798.5 1073 82.5
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1794.6 1071 82.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1792.7 1073 82.6
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1786.5 1074 82.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1074 81.6
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1074 81.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1783.8 1071 81.5
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1781.9 1077 82.5
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1780.0 1072 82.1
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1778.1 1079 81.8
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1775.8 1075 82.5
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1769.6 1090 81.0
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1760.3 1075 81.6
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1758.8 1075 81.2
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1755.7 1075 80.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1755.7 1090 80.6
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1751.1 951 91.8
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1748.0 1068 81.3
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1745.3 1077 81.3
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1745.3 1136 77.8
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1074 80.0
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1737.6 1046 82.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1728.4 1074 79.6
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1726.5 1078 79.8
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1725.3 1068 80.1
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1724.5 1076 79.6
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1723.4 1079 79.1
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1715.7 1101 77.3
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1715.3 1112 77.0
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1714.9 1073 79.9
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1714.1 1078 78.5
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1713.0 1076 79.1
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1708.3 1078 78.1
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1703.3 1113 76.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1701.8 1072 78.9
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1699.9 1076 79.0
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1699.9 1076 79.0
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1698.7 1079 78.3
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1693.3 1074 78.1
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1689.9 1111 75.8
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1684.8 1075 78.0
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1684.5 1027 81.7
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1682.9 1073 77.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1681.8 1067 78.7
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1674.4 1147 74.0
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1671.8 1075 77.2
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1667.9 1079 77.1
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1663.3 1109 75.5
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1661.0 1147 73.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1650.2 1076 75.9
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1646.3 986 82.5
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1640.6 1067 77.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1639.0 1069 76.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1637.1 1076 76.3
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1635.5 1074 75.7
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1633.6 1197 71.0
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1623.2 1074 75.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1622.8 1066 75.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1620.9 1074 75.2
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1613.2 1068 75.3
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1612.4 1070 75.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1607.8 1074 74.8
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1605.9 1102 75.1
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1600.5 1075 74.3
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1593.9 1074 75.1
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1593.6 1070 75.1
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1592.8 1070 75.0
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1577.8 1070 74.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1577.4 1070 74.8
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1574.7 1014 79.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1573.5 1268 66.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1549.6 1076 72.7
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1546.9 1096 71.4
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1518.1 1103 70.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1501.1 1097 69.1
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1491.9 1112 69.7
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1489.9 1078 69.6
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1484.9 1097 68.4
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1482.6 1067 71.1
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1447.2 1110 67.9
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1434.9 840 84.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1431.4 836 84.6
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1425.2 872 80.7
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1402.1 1061 69.0
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1383.2 863 78.2
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1229.2 1072 60.4
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1185.6 679 85.4
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1179.1 767 75.9
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1162.5 733 78.2
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1080.9 1085 51.9
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.2e-294 1016.9 1471 42.9
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 6.4e-293 1011.1 1072 50.3
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.6e-283 978.4 1098 48.9
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.1e-267 926.4 1094 45.8
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.5e-262 910.2 672 69.5
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.0e-261 907.5 527 86.1
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.3e-256 888.3 584 78.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 4.4e-249 865.5 1331 37.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.2e-242 842.0 626 66.5
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.7e-224 782.7 690 59.9
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 7.7e-222 775.0 552 73.0
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 6.2e-203 712.2 451 76.1
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.6e-196 689.1 429 80.9
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 2.9e-184 650.2 420 72.6
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-163 581.6 536 54.1
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 8.2e-147 525.8 312 83.3
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 3.2e-135 487.3 378 70.4
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.8e-123 447.6 403 58.3
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.7e-118 431.0 332 72.0
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.7e-97 361.3 821 32.9
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 2.2e-91 341.7 769 31.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 5.4e-82 310.5 1142 25.4
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.7e-81 308.1 314 53.5
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.4e-77 295.0 235 68.1
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 9.9e-76 289.7 180 77.2
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.1e-70 271.9 198 75.8
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.2e-58 231.5 212 57.1
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-52 213.0 594 32.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.1e-45 188.3 212 55.7
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 5.3e-45 187.6 120 71.7
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 6.9e-45 187.2 121 71.1
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.5e-44 184.5 136 69.1
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.7e-43 182.6 212 53.3
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 8.4e-43 180.3 250 42.4
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.1e-42 179.9 329 41.0
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 3.2e-42 178.3 170 56.5
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.0e-40 171.8 266 37.6
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 4.5e-36 157.9 712 23.2
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.7e-35 156.0 183 51.4
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 5.0e-35 154.5 244 41.4
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 3.0e-32 145.2 85 82.4
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 3.0e-32 145.2 87 80.5
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.2e-26 125.2 87 71.3
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.6e-25 121.7 164 45.7
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.7e-25 121.3 138 52.9
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.3e-22 113.2 64 81.2
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 6.3e-22 110.9 69 81.2
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 2.7e-17 95.5 161 36.6
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.4e-16 93.2 58 77.6
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 5.2e-16 91.3 95 54.7
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 7.4e-15 87.4 64 65.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 2.2e-14 85.9 45 82.2
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.0e-12 79.3 56 67.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 2.2e-11 75.9 55 63.6
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 6.5e-11 74.3 47 72.3
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.7e-09 68.9 88 48.9
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 5.2e-08 64.7 34 73.5
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.8e-06 58.9 37 73.0
arahy.Tifrunner.gnm1.ann1.9916FQ Arachis hypogaea HOM05D018557 ORTHO05D084404 6.3e-06 57.8 74 51.4


User provided reference genes

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